Cargando…
Prognostic signature related to the immune environment of oral squamous cell carcinoma
Oral squamous cell carcinoma (OSCC) prognosis remains poor. Here we aimed to identify an effective prognostic signature for predicting the survival of patients with OSCC. Gene-expression and clinical data were obtained from the Cancer Genome Atlas database. Immune microenvironment-associated genes w...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
De Gruyter
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9482419/ https://www.ncbi.nlm.nih.gov/pubmed/36185403 http://dx.doi.org/10.1515/biol-2022-0467 |
_version_ | 1784791450886602752 |
---|---|
author | Hua, Yingjie Sun, Xuehui Luan, Kefeng Wang, Changlei |
author_facet | Hua, Yingjie Sun, Xuehui Luan, Kefeng Wang, Changlei |
author_sort | Hua, Yingjie |
collection | PubMed |
description | Oral squamous cell carcinoma (OSCC) prognosis remains poor. Here we aimed to identify an effective prognostic signature for predicting the survival of patients with OSCC. Gene-expression and clinical data were obtained from the Cancer Genome Atlas database. Immune microenvironment-associated genes were identified using bioinformatics. Subtype and risk-score analyses were performed for these genes. Kaplan–Meier analysis and immune cell infiltration level were explored in different subtypes and risk-score groups. The prognostic ability, independent prognosis, and clinical features of the risk score were assessed. Furthermore, immunotherapy response based on the risk score was explored. Finally, a conjoint analysis of the subtype and risk-score groups was performed to determine the best prognostic combination. We found 11 potential prognostic genes and constructed a risk-score model. The subtype cluster 2 and a high-risk group showed the worst overall survival; differences in survival status might be due to the different immune cell infiltration levels. The risk score showed good performance, independent prognostic value, and valuable clinical application. Higher risk scores showed higher Tumor Immune Dysfunction and Exclusion scores, indicating that patients with a high-risk score were less likely to benefit from immunotherapy. Finally, conjoint analysis for the subgroups and risk groups showed the best predictive ability. |
format | Online Article Text |
id | pubmed-9482419 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | De Gruyter |
record_format | MEDLINE/PubMed |
spelling | pubmed-94824192022-10-01 Prognostic signature related to the immune environment of oral squamous cell carcinoma Hua, Yingjie Sun, Xuehui Luan, Kefeng Wang, Changlei Open Life Sci Research Article Oral squamous cell carcinoma (OSCC) prognosis remains poor. Here we aimed to identify an effective prognostic signature for predicting the survival of patients with OSCC. Gene-expression and clinical data were obtained from the Cancer Genome Atlas database. Immune microenvironment-associated genes were identified using bioinformatics. Subtype and risk-score analyses were performed for these genes. Kaplan–Meier analysis and immune cell infiltration level were explored in different subtypes and risk-score groups. The prognostic ability, independent prognosis, and clinical features of the risk score were assessed. Furthermore, immunotherapy response based on the risk score was explored. Finally, a conjoint analysis of the subtype and risk-score groups was performed to determine the best prognostic combination. We found 11 potential prognostic genes and constructed a risk-score model. The subtype cluster 2 and a high-risk group showed the worst overall survival; differences in survival status might be due to the different immune cell infiltration levels. The risk score showed good performance, independent prognostic value, and valuable clinical application. Higher risk scores showed higher Tumor Immune Dysfunction and Exclusion scores, indicating that patients with a high-risk score were less likely to benefit from immunotherapy. Finally, conjoint analysis for the subgroups and risk groups showed the best predictive ability. De Gruyter 2022-09-14 /pmc/articles/PMC9482419/ /pubmed/36185403 http://dx.doi.org/10.1515/biol-2022-0467 Text en © 2022 Yingjie Hua et al., published by De Gruyter https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License. |
spellingShingle | Research Article Hua, Yingjie Sun, Xuehui Luan, Kefeng Wang, Changlei Prognostic signature related to the immune environment of oral squamous cell carcinoma |
title | Prognostic signature related to the immune environment of oral squamous cell carcinoma |
title_full | Prognostic signature related to the immune environment of oral squamous cell carcinoma |
title_fullStr | Prognostic signature related to the immune environment of oral squamous cell carcinoma |
title_full_unstemmed | Prognostic signature related to the immune environment of oral squamous cell carcinoma |
title_short | Prognostic signature related to the immune environment of oral squamous cell carcinoma |
title_sort | prognostic signature related to the immune environment of oral squamous cell carcinoma |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9482419/ https://www.ncbi.nlm.nih.gov/pubmed/36185403 http://dx.doi.org/10.1515/biol-2022-0467 |
work_keys_str_mv | AT huayingjie prognosticsignaturerelatedtotheimmuneenvironmentoforalsquamouscellcarcinoma AT sunxuehui prognosticsignaturerelatedtotheimmuneenvironmentoforalsquamouscellcarcinoma AT luankefeng prognosticsignaturerelatedtotheimmuneenvironmentoforalsquamouscellcarcinoma AT wangchanglei prognosticsignaturerelatedtotheimmuneenvironmentoforalsquamouscellcarcinoma |