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Paenibacillus allorhizoplanae sp. nov. from the rhizoplane of a Zea mays root
A Gram-positive staining, aerobic, endospore-forming bacterial strain, isolated from the rhizosphere of Zea mays was studied for its detailed taxonomic allocation. Based on the 16S rRNA gene sequence similarity comparisons, strain JJ-42( T) was shown to be a member of the genus Paenibacillus, most c...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Springer Berlin Heidelberg
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9482572/ https://www.ncbi.nlm.nih.gov/pubmed/36115912 http://dx.doi.org/10.1007/s00203-022-03225-w |
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author | Kämpfer, Peter Lipski, André Lamothe, Lucie Clermont, Dominique Criscuolo, Alexis McInroy, John A. Glaeser, Stefanie P. |
author_facet | Kämpfer, Peter Lipski, André Lamothe, Lucie Clermont, Dominique Criscuolo, Alexis McInroy, John A. Glaeser, Stefanie P. |
author_sort | Kämpfer, Peter |
collection | PubMed |
description | A Gram-positive staining, aerobic, endospore-forming bacterial strain, isolated from the rhizosphere of Zea mays was studied for its detailed taxonomic allocation. Based on the 16S rRNA gene sequence similarity comparisons, strain JJ-42( T) was shown to be a member of the genus Paenibacillus, most closely related to the type strain of Paenibacillus pectinilyticus (98.8%). The 16S rRNA gene sequence similarity to all other Paenibacillus species was below 98.5%. The pairwise average nucleotide identity (ANI) and digital DNA−DNA hybridization (dDDH) values of the JJ-42( T) genome assembly against publicly available Paenibacillus type strain genomes were below 92% and 47%, respectively. The quinone system of strain JJ-42( T) consisted exclusively of menaquinone MK-7. The polar lipid profile consisted of the major components diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, three aminophospholipids (APL), and one unidentified lipid. The major fatty acids were iso- and anteiso-branched with the major compound anteiso C(15:0). Physiological and biochemical characteristics allowed a further phenotypic differentiation of strain JJ-42( T) from the most closely related species. Thus, JJ-42( T) represents a novel species of the genus Paenibacillus, for which the name Paenibacillus allorhizoplanae sp. nov. is proposed, with JJ-42( T) (= LMG 32089( T) = CCM 9085( T) = DSM 111786( T) = CIP 111891( T)) as the type strain. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00203-022-03225-w. |
format | Online Article Text |
id | pubmed-9482572 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-94825722022-09-19 Paenibacillus allorhizoplanae sp. nov. from the rhizoplane of a Zea mays root Kämpfer, Peter Lipski, André Lamothe, Lucie Clermont, Dominique Criscuolo, Alexis McInroy, John A. Glaeser, Stefanie P. Arch Microbiol Original Paper A Gram-positive staining, aerobic, endospore-forming bacterial strain, isolated from the rhizosphere of Zea mays was studied for its detailed taxonomic allocation. Based on the 16S rRNA gene sequence similarity comparisons, strain JJ-42( T) was shown to be a member of the genus Paenibacillus, most closely related to the type strain of Paenibacillus pectinilyticus (98.8%). The 16S rRNA gene sequence similarity to all other Paenibacillus species was below 98.5%. The pairwise average nucleotide identity (ANI) and digital DNA−DNA hybridization (dDDH) values of the JJ-42( T) genome assembly against publicly available Paenibacillus type strain genomes were below 92% and 47%, respectively. The quinone system of strain JJ-42( T) consisted exclusively of menaquinone MK-7. The polar lipid profile consisted of the major components diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, three aminophospholipids (APL), and one unidentified lipid. The major fatty acids were iso- and anteiso-branched with the major compound anteiso C(15:0). Physiological and biochemical characteristics allowed a further phenotypic differentiation of strain JJ-42( T) from the most closely related species. Thus, JJ-42( T) represents a novel species of the genus Paenibacillus, for which the name Paenibacillus allorhizoplanae sp. nov. is proposed, with JJ-42( T) (= LMG 32089( T) = CCM 9085( T) = DSM 111786( T) = CIP 111891( T)) as the type strain. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00203-022-03225-w. Springer Berlin Heidelberg 2022-09-18 2022 /pmc/articles/PMC9482572/ /pubmed/36115912 http://dx.doi.org/10.1007/s00203-022-03225-w Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Paper Kämpfer, Peter Lipski, André Lamothe, Lucie Clermont, Dominique Criscuolo, Alexis McInroy, John A. Glaeser, Stefanie P. Paenibacillus allorhizoplanae sp. nov. from the rhizoplane of a Zea mays root |
title | Paenibacillus allorhizoplanae sp. nov. from the rhizoplane of a Zea mays root |
title_full | Paenibacillus allorhizoplanae sp. nov. from the rhizoplane of a Zea mays root |
title_fullStr | Paenibacillus allorhizoplanae sp. nov. from the rhizoplane of a Zea mays root |
title_full_unstemmed | Paenibacillus allorhizoplanae sp. nov. from the rhizoplane of a Zea mays root |
title_short | Paenibacillus allorhizoplanae sp. nov. from the rhizoplane of a Zea mays root |
title_sort | paenibacillus allorhizoplanae sp. nov. from the rhizoplane of a zea mays root |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9482572/ https://www.ncbi.nlm.nih.gov/pubmed/36115912 http://dx.doi.org/10.1007/s00203-022-03225-w |
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