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Identification of Important Genes of Keratoconus and Construction of the Diagnostic Model

OBJECTIVE: The aim of the study is to investigate the potential role of keratoconus (KC) in the diagnosis of keratoconus (KC). METHODS: GSE151631 and GSE77938 were downloaded from the comprehensive gene expression database (GEO). By using the random forest model (RF), support vector machine model (S...

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Detalles Bibliográficos
Autores principales: Wang, Lin, Wang, Yuqing, Liu, Juan, Zhao, Wencheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9484959/
https://www.ncbi.nlm.nih.gov/pubmed/36160033
http://dx.doi.org/10.1155/2022/5878460
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author Wang, Lin
Wang, Yuqing
Liu, Juan
Zhao, Wencheng
author_facet Wang, Lin
Wang, Yuqing
Liu, Juan
Zhao, Wencheng
author_sort Wang, Lin
collection PubMed
description OBJECTIVE: The aim of the study is to investigate the potential role of keratoconus (KC) in the diagnosis of keratoconus (KC). METHODS: GSE151631 and GSE77938 were downloaded from the comprehensive gene expression database (GEO). By using the random forest model (RF), support vector machine model (SVM), and generalized linear model (GLM), important immune-related genes were identified as biomarkers for KC diagnosis. RESULTS: Through the LASSO, RFE, and RF algorithms and comparing the three sets of DEGs, a total of 8 overlapping DEGs were obtained. We took 8 DEGs as the final optimal combination of DEGs: AREG, BBC3, DUSP2, map3k8, Smad7, CDKN1A, JUN, and LIF. CONCLUSION: Abnormal cell proliferation, apoptosis, and autophagy defects are related to KC, which may be the etiology and potential target of KC.
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spelling pubmed-94849592022-09-22 Identification of Important Genes of Keratoconus and Construction of the Diagnostic Model Wang, Lin Wang, Yuqing Liu, Juan Zhao, Wencheng Genet Res (Camb) Research Article OBJECTIVE: The aim of the study is to investigate the potential role of keratoconus (KC) in the diagnosis of keratoconus (KC). METHODS: GSE151631 and GSE77938 were downloaded from the comprehensive gene expression database (GEO). By using the random forest model (RF), support vector machine model (SVM), and generalized linear model (GLM), important immune-related genes were identified as biomarkers for KC diagnosis. RESULTS: Through the LASSO, RFE, and RF algorithms and comparing the three sets of DEGs, a total of 8 overlapping DEGs were obtained. We took 8 DEGs as the final optimal combination of DEGs: AREG, BBC3, DUSP2, map3k8, Smad7, CDKN1A, JUN, and LIF. CONCLUSION: Abnormal cell proliferation, apoptosis, and autophagy defects are related to KC, which may be the etiology and potential target of KC. Hindawi 2022-09-12 /pmc/articles/PMC9484959/ /pubmed/36160033 http://dx.doi.org/10.1155/2022/5878460 Text en Copyright © 2022 Lin Wang et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Wang, Lin
Wang, Yuqing
Liu, Juan
Zhao, Wencheng
Identification of Important Genes of Keratoconus and Construction of the Diagnostic Model
title Identification of Important Genes of Keratoconus and Construction of the Diagnostic Model
title_full Identification of Important Genes of Keratoconus and Construction of the Diagnostic Model
title_fullStr Identification of Important Genes of Keratoconus and Construction of the Diagnostic Model
title_full_unstemmed Identification of Important Genes of Keratoconus and Construction of the Diagnostic Model
title_short Identification of Important Genes of Keratoconus and Construction of the Diagnostic Model
title_sort identification of important genes of keratoconus and construction of the diagnostic model
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9484959/
https://www.ncbi.nlm.nih.gov/pubmed/36160033
http://dx.doi.org/10.1155/2022/5878460
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