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Identification of Important Genes of Keratoconus and Construction of the Diagnostic Model
OBJECTIVE: The aim of the study is to investigate the potential role of keratoconus (KC) in the diagnosis of keratoconus (KC). METHODS: GSE151631 and GSE77938 were downloaded from the comprehensive gene expression database (GEO). By using the random forest model (RF), support vector machine model (S...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9484959/ https://www.ncbi.nlm.nih.gov/pubmed/36160033 http://dx.doi.org/10.1155/2022/5878460 |
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author | Wang, Lin Wang, Yuqing Liu, Juan Zhao, Wencheng |
author_facet | Wang, Lin Wang, Yuqing Liu, Juan Zhao, Wencheng |
author_sort | Wang, Lin |
collection | PubMed |
description | OBJECTIVE: The aim of the study is to investigate the potential role of keratoconus (KC) in the diagnosis of keratoconus (KC). METHODS: GSE151631 and GSE77938 were downloaded from the comprehensive gene expression database (GEO). By using the random forest model (RF), support vector machine model (SVM), and generalized linear model (GLM), important immune-related genes were identified as biomarkers for KC diagnosis. RESULTS: Through the LASSO, RFE, and RF algorithms and comparing the three sets of DEGs, a total of 8 overlapping DEGs were obtained. We took 8 DEGs as the final optimal combination of DEGs: AREG, BBC3, DUSP2, map3k8, Smad7, CDKN1A, JUN, and LIF. CONCLUSION: Abnormal cell proliferation, apoptosis, and autophagy defects are related to KC, which may be the etiology and potential target of KC. |
format | Online Article Text |
id | pubmed-9484959 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-94849592022-09-22 Identification of Important Genes of Keratoconus and Construction of the Diagnostic Model Wang, Lin Wang, Yuqing Liu, Juan Zhao, Wencheng Genet Res (Camb) Research Article OBJECTIVE: The aim of the study is to investigate the potential role of keratoconus (KC) in the diagnosis of keratoconus (KC). METHODS: GSE151631 and GSE77938 were downloaded from the comprehensive gene expression database (GEO). By using the random forest model (RF), support vector machine model (SVM), and generalized linear model (GLM), important immune-related genes were identified as biomarkers for KC diagnosis. RESULTS: Through the LASSO, RFE, and RF algorithms and comparing the three sets of DEGs, a total of 8 overlapping DEGs were obtained. We took 8 DEGs as the final optimal combination of DEGs: AREG, BBC3, DUSP2, map3k8, Smad7, CDKN1A, JUN, and LIF. CONCLUSION: Abnormal cell proliferation, apoptosis, and autophagy defects are related to KC, which may be the etiology and potential target of KC. Hindawi 2022-09-12 /pmc/articles/PMC9484959/ /pubmed/36160033 http://dx.doi.org/10.1155/2022/5878460 Text en Copyright © 2022 Lin Wang et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Wang, Lin Wang, Yuqing Liu, Juan Zhao, Wencheng Identification of Important Genes of Keratoconus and Construction of the Diagnostic Model |
title | Identification of Important Genes of Keratoconus and Construction of the Diagnostic Model |
title_full | Identification of Important Genes of Keratoconus and Construction of the Diagnostic Model |
title_fullStr | Identification of Important Genes of Keratoconus and Construction of the Diagnostic Model |
title_full_unstemmed | Identification of Important Genes of Keratoconus and Construction of the Diagnostic Model |
title_short | Identification of Important Genes of Keratoconus and Construction of the Diagnostic Model |
title_sort | identification of important genes of keratoconus and construction of the diagnostic model |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9484959/ https://www.ncbi.nlm.nih.gov/pubmed/36160033 http://dx.doi.org/10.1155/2022/5878460 |
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