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Application of miRNA Biomarkers in Predicting Overall Survival Outcomes for Lung Adenocarcinoma

BACKGROUND: With the development of research, the importance of microRNAs (miRNAs) in the occurrence, metastasis, and prognosis of lung adenocarcinoma (LUAD) has attracted extensive attention. This study is aimed at predicting overall survival (OS) results through bioinformatics to identify novel mi...

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Detalles Bibliográficos
Autores principales: Li, Tingting, Liu, Huanqing, Dong, Chunsheng, Lyu, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9485713/
https://www.ncbi.nlm.nih.gov/pubmed/36147635
http://dx.doi.org/10.1155/2022/5249576
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author Li, Tingting
Liu, Huanqing
Dong, Chunsheng
Lyu, Jun
author_facet Li, Tingting
Liu, Huanqing
Dong, Chunsheng
Lyu, Jun
author_sort Li, Tingting
collection PubMed
description BACKGROUND: With the development of research, the importance of microRNAs (miRNAs) in the occurrence, metastasis, and prognosis of lung adenocarcinoma (LUAD) has attracted extensive attention. This study is aimed at predicting overall survival (OS) results through bioinformatics to identify novel miRNA biomarkers and hub genes. MATERIALS AND METHODS: The data of LUAD-related miRNA and mRNA samples was downloaded from The Cancer Genome Atlas (TCGA) database. Upon screening and pretreatment of initial data, TCGA data were analyzed using R platform and a series of analytical tools to identify biomarkers with high specificity and sensitivity. RESULTS: 7 miRNAs and 13 hub genes that had strong relation to the overall surviving status were identified in patients with LUAD. The expression of seven miRNAs (hsa-miR-19a-3p, hsa-miR-126-5p, hsa-miR-556-3p, hsa-miR-671-5p, hsa-miR-937-3p, hsa-miR-4664-3p, and hsa-miR-4746-5p) could apparently improve the OS rate of patient with LUAD. The 13 hub genes, namely, CCT6A, CDK5R1, CEP55, DNAJB4, EGLN3, HDGF, HOXC8, LIMD1, MKI67, PCP4L1, PPIL1, SCAI, and STK32A, showed a correlation with the OS status. CONCLUSION: 7 miRNAs were identified as novel biomarkers for the prognosis of patients with LUAD. This study offered a deeper comprehension of LUAD treatment and prognosis from the molecular level and helped enhance the understanding of the pathogenesis and potential molecular events of LUAD.
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spelling pubmed-94857132022-09-21 Application of miRNA Biomarkers in Predicting Overall Survival Outcomes for Lung Adenocarcinoma Li, Tingting Liu, Huanqing Dong, Chunsheng Lyu, Jun Biomed Res Int Research Article BACKGROUND: With the development of research, the importance of microRNAs (miRNAs) in the occurrence, metastasis, and prognosis of lung adenocarcinoma (LUAD) has attracted extensive attention. This study is aimed at predicting overall survival (OS) results through bioinformatics to identify novel miRNA biomarkers and hub genes. MATERIALS AND METHODS: The data of LUAD-related miRNA and mRNA samples was downloaded from The Cancer Genome Atlas (TCGA) database. Upon screening and pretreatment of initial data, TCGA data were analyzed using R platform and a series of analytical tools to identify biomarkers with high specificity and sensitivity. RESULTS: 7 miRNAs and 13 hub genes that had strong relation to the overall surviving status were identified in patients with LUAD. The expression of seven miRNAs (hsa-miR-19a-3p, hsa-miR-126-5p, hsa-miR-556-3p, hsa-miR-671-5p, hsa-miR-937-3p, hsa-miR-4664-3p, and hsa-miR-4746-5p) could apparently improve the OS rate of patient with LUAD. The 13 hub genes, namely, CCT6A, CDK5R1, CEP55, DNAJB4, EGLN3, HDGF, HOXC8, LIMD1, MKI67, PCP4L1, PPIL1, SCAI, and STK32A, showed a correlation with the OS status. CONCLUSION: 7 miRNAs were identified as novel biomarkers for the prognosis of patients with LUAD. This study offered a deeper comprehension of LUAD treatment and prognosis from the molecular level and helped enhance the understanding of the pathogenesis and potential molecular events of LUAD. Hindawi 2022-09-12 /pmc/articles/PMC9485713/ /pubmed/36147635 http://dx.doi.org/10.1155/2022/5249576 Text en Copyright © 2022 Tingting Li et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Li, Tingting
Liu, Huanqing
Dong, Chunsheng
Lyu, Jun
Application of miRNA Biomarkers in Predicting Overall Survival Outcomes for Lung Adenocarcinoma
title Application of miRNA Biomarkers in Predicting Overall Survival Outcomes for Lung Adenocarcinoma
title_full Application of miRNA Biomarkers in Predicting Overall Survival Outcomes for Lung Adenocarcinoma
title_fullStr Application of miRNA Biomarkers in Predicting Overall Survival Outcomes for Lung Adenocarcinoma
title_full_unstemmed Application of miRNA Biomarkers in Predicting Overall Survival Outcomes for Lung Adenocarcinoma
title_short Application of miRNA Biomarkers in Predicting Overall Survival Outcomes for Lung Adenocarcinoma
title_sort application of mirna biomarkers in predicting overall survival outcomes for lung adenocarcinoma
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9485713/
https://www.ncbi.nlm.nih.gov/pubmed/36147635
http://dx.doi.org/10.1155/2022/5249576
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