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Genomic and transcriptomic analyses provide insights into valuable fatty acid biosynthesis and environmental adaptation of yellowhorn
Yellowhorn (Xanthoceras sorbifolium) is an oil-bearing tree species growing naturally in poor soil. The kernel of yellowhorn contains valuable fatty acids like nervonic acid. However, the genetic basis underlying the biosynthesis of valued fatty acids and adaptation to harsh environments is mainly u...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9486082/ https://www.ncbi.nlm.nih.gov/pubmed/36147226 http://dx.doi.org/10.3389/fpls.2022.991197 |
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author | Liang, Qiang Liu, Jian Ning Fang, Hongcheng Dong, Yuhui Wang, Changxi Bao, Yan Hou, Wenrui Zhou, Rui Ma, Xinmei Gai, Shasha Wang, Lichang Li, Shouke Yang, Ke Qiang Sang, Ya Lin |
author_facet | Liang, Qiang Liu, Jian Ning Fang, Hongcheng Dong, Yuhui Wang, Changxi Bao, Yan Hou, Wenrui Zhou, Rui Ma, Xinmei Gai, Shasha Wang, Lichang Li, Shouke Yang, Ke Qiang Sang, Ya Lin |
author_sort | Liang, Qiang |
collection | PubMed |
description | Yellowhorn (Xanthoceras sorbifolium) is an oil-bearing tree species growing naturally in poor soil. The kernel of yellowhorn contains valuable fatty acids like nervonic acid. However, the genetic basis underlying the biosynthesis of valued fatty acids and adaptation to harsh environments is mainly unexplored in yellowhorn. Here, we presented a haplotype-resolved chromosome-scale genome assembly of yellowhorn with the size of 490.44 Mb containing scaffold N50 of 34.27 Mb. Comparative genomics, in combination with transcriptome profiling analyses, showed that expansion of gene families like long-chain acyl-CoA synthetase and ankyrins contribute to yellowhorn fatty acid biosynthesis and defense against abiotic stresses, respectively. By integrating genomic and transcriptomic data of yellowhorn, we found that the transcription of 3-ketoacyl-CoA synthase gene XS04G00959 was consistent with the accumulation of nervonic and erucic acid biosynthesis, suggesting its critical regulatory roles in their biosynthesis. Collectively, these results enhance our understanding of the genetic basis underlying the biosynthesis of valuable fatty acids and adaptation to harsh environments in yellowhorn and provide foundations for its genetic improvement. |
format | Online Article Text |
id | pubmed-9486082 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-94860822022-09-21 Genomic and transcriptomic analyses provide insights into valuable fatty acid biosynthesis and environmental adaptation of yellowhorn Liang, Qiang Liu, Jian Ning Fang, Hongcheng Dong, Yuhui Wang, Changxi Bao, Yan Hou, Wenrui Zhou, Rui Ma, Xinmei Gai, Shasha Wang, Lichang Li, Shouke Yang, Ke Qiang Sang, Ya Lin Front Plant Sci Plant Science Yellowhorn (Xanthoceras sorbifolium) is an oil-bearing tree species growing naturally in poor soil. The kernel of yellowhorn contains valuable fatty acids like nervonic acid. However, the genetic basis underlying the biosynthesis of valued fatty acids and adaptation to harsh environments is mainly unexplored in yellowhorn. Here, we presented a haplotype-resolved chromosome-scale genome assembly of yellowhorn with the size of 490.44 Mb containing scaffold N50 of 34.27 Mb. Comparative genomics, in combination with transcriptome profiling analyses, showed that expansion of gene families like long-chain acyl-CoA synthetase and ankyrins contribute to yellowhorn fatty acid biosynthesis and defense against abiotic stresses, respectively. By integrating genomic and transcriptomic data of yellowhorn, we found that the transcription of 3-ketoacyl-CoA synthase gene XS04G00959 was consistent with the accumulation of nervonic and erucic acid biosynthesis, suggesting its critical regulatory roles in their biosynthesis. Collectively, these results enhance our understanding of the genetic basis underlying the biosynthesis of valuable fatty acids and adaptation to harsh environments in yellowhorn and provide foundations for its genetic improvement. Frontiers Media S.A. 2022-09-06 /pmc/articles/PMC9486082/ /pubmed/36147226 http://dx.doi.org/10.3389/fpls.2022.991197 Text en Copyright © 2022 Liang, Liu, Fang, Dong, Wang, Bao, Hou, Zhou, Ma, Gai, Wang, Li, Yang and Sang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Liang, Qiang Liu, Jian Ning Fang, Hongcheng Dong, Yuhui Wang, Changxi Bao, Yan Hou, Wenrui Zhou, Rui Ma, Xinmei Gai, Shasha Wang, Lichang Li, Shouke Yang, Ke Qiang Sang, Ya Lin Genomic and transcriptomic analyses provide insights into valuable fatty acid biosynthesis and environmental adaptation of yellowhorn |
title | Genomic and transcriptomic analyses provide insights into valuable fatty acid biosynthesis and environmental adaptation of yellowhorn |
title_full | Genomic and transcriptomic analyses provide insights into valuable fatty acid biosynthesis and environmental adaptation of yellowhorn |
title_fullStr | Genomic and transcriptomic analyses provide insights into valuable fatty acid biosynthesis and environmental adaptation of yellowhorn |
title_full_unstemmed | Genomic and transcriptomic analyses provide insights into valuable fatty acid biosynthesis and environmental adaptation of yellowhorn |
title_short | Genomic and transcriptomic analyses provide insights into valuable fatty acid biosynthesis and environmental adaptation of yellowhorn |
title_sort | genomic and transcriptomic analyses provide insights into valuable fatty acid biosynthesis and environmental adaptation of yellowhorn |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9486082/ https://www.ncbi.nlm.nih.gov/pubmed/36147226 http://dx.doi.org/10.3389/fpls.2022.991197 |
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