Cargando…

CHERRY: a Computational metHod for accuratE pRediction of virus–pRokarYotic interactions using a graph encoder–decoder model

Prokaryotic viruses, which infect bacteria and archaea, are key players in microbial communities. Predicting the hosts of prokaryotic viruses helps decipher the dynamic relationship between microbes. Experimental methods for host prediction cannot keep pace with the fast accumulation of sequenced ph...

Descripción completa

Detalles Bibliográficos
Autores principales:	Shang, Jiayu, Sun, Yanni
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2022
Materias:	Problem Solving Protocol
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9487644/ https://www.ncbi.nlm.nih.gov/pubmed/35595715 http://dx.doi.org/10.1093/bib/bbac182

Ejemplares similares

RdRp-based sensitive taxonomic classification of RNA viruses for metagenomic data
por: Tang, Xubo, et al.
Publicado: (2022)

PhaTYP: predicting the lifestyle for bacteriophages using BERT
por: Shang, Jiayu, et al.
Publicado: (2022)

Accurate identification of bacteriophages from metagenomic data using Transformer
por: Shang, Jiayu, et al.
Publicado: (2022)

STALLION: a stacking-based ensemble learning framework for prokaryotic lysine acetylation site prediction
por: Basith, Shaherin, et al.
Publicado: (2021)

A new approach to decode DNA methylome and genomic variants simultaneously from double strand bisulfite sequencing
por: Liang, Jialong, et al.
Publicado: (2021)

A statistical framework for predicting critical regions of p53-dependent enhancers
por: Niu, Xiaohui, et al.
Publicado: (2020)

Characterization on the oncogenic effect of the missense mutations of p53 via machine learning
por: Pan, Qisheng, et al.
Publicado: (2023)

Sequence-based prediction of pH-dependent protein solubility using CamSol
por: Oeller, Marc, et al.
Publicado: (2023)

HMMPolish: a coding region polishing tool for TGS-sequenced RNA viruses
por: Yu, Runzhou, et al.
Publicado: (2023)

An inductive graph neural network model for compound–protein interaction prediction based on a homogeneous graph
por: Wan, Xiaozhe, et al.
Publicado: (2022)

cropCSM: designing safe and potent herbicides with graph-based signatures
por: Pires, Douglas E V, et al.
Publicado: (2022)

Ensembles of knowledge graph embedding models improve predictions for drug discovery
por: Rivas-Barragan, Daniel, et al.
Publicado: (2022)

SMG: self-supervised masked graph learning for cancer gene identification
por: Cui, Yan, et al.
Publicado: (2023)

spaCI: deciphering spatial cellular communications through adaptive graph model
por: Tang, Ziyang, et al.
Publicado: (2022)

Drug repositioning based on weighted local information augmented graph neural network
por: Meng, Yajie, et al.
Publicado: (2023)

An end-to-end heterogeneous graph attention network for Mycobacterium tuberculosis drug-resistance prediction
por: Yang, Yang, et al.
Publicado: (2021)

netANOVA: novel graph clustering technique with significance assessment via hierarchical ANOVA
por: Duroux, Diane, et al.
Publicado: (2023)

Subgraph extraction and graph representation learning for single cell Hi-C imputation and clustering
por: Zheng, Jiahao, et al.
Publicado: (2023)

A universal framework for single-cell multi-omics data integration with graph convolutional networks
por: Gao, Hongli, et al.
Publicado: (2023)

Fusing 2D and 3D molecular graphs as unambiguous molecular descriptors for conformational and chiral stereoisomers
por: Du, Wenjie, et al.
Publicado: (2022)

Assessing protein model quality based on deep graph coupled networks using protein language model
por: Liu, Dong, et al.
Publicado: (2023)

Predicting gene regulatory links from single-cell RNA-seq data using graph neural networks
por: Mao, Guo, et al.
Publicado: (2023)

MeSHHeading2vec: a new method for representing MeSH headings as vectors based on graph embedding algorithm
por: Guo, Zhen-Hao, et al.
Publicado: (2020)

AttentionSiteDTI: an interpretable graph-based model for drug-target interaction prediction using NLP sentence-level relation classification
por: Yazdani-Jahromi, Mehdi, et al.
Publicado: (2022)

Pleuritic Chest Pain; Where Should We Search for?
por: Gharib, Behdad, et al.
Publicado: (2011)

A young man with multiple joint pains and fever: A case with the importance of accurate history taking
por: Sonoda, Kento, et al.
Publicado: (2017)

A 16-year odyssey of cardiac sarcoid masquerading as idiopathic premature ventricular contractions and then arrhythmogenic cardiomyopathy
por: Nakamura, Tomofumi, et al.
Publicado: (2018)

Bundle branch reentry with His dissociation—The His bundle: Bystander or participant?
por: Nageh, Maged F., et al.
Publicado: (2018)

Intermittent loss of capture in a His bundle pacemaker: What is the cause?
por: Padala, Santosh K., et al.
Publicado: (2017)

Impact of a novel algorithm designed to reduce T-wave oversensing with the subcutaneous defibrillator in a patient with type I Brugada electrocardiogram
por: Boveda, Serge, et al.
Publicado: (2017)

Pitfalls of pacemaker detection of ventricular high-rate events
por: Mansour, Fadi, et al.
Publicado: (2018)

Beauty and the beat: A complicated case of multifocal ectopic Purkinje-related premature contractions
por: ter Bekke, Rachel M.A., et al.
Publicado: (2018)

Successful transseptal puncture and cryoballoon ablation of symptomatic paroxysmal atrial fibrillation via jugular access in a patient with bilateral thrombotic femoral vein occlusion
por: Kox, Thomas, et al.
Publicado: (2019)

Cardiac implantable electronic device malfunction after deceleration injury without obvious chest trauma
por: Barakat, Amr F., et al.
Publicado: (2019)

Clinical problem solving: Maneuvering around a narrow complex tachycardia in a patient with Mustard repair for transposition of the great arteries
por: Jackson, Nicholas, et al.
Publicado: (2016)

Parasternal intercostal approach as an alternative to subxiphoid approach for epicardial catheter ablation: A case report
por: Miyamoto, Koji, et al.
Publicado: (2015)

An unusual ICD shock: What is the mechanism?
por: Gopinathannair, Rakesh, et al.
Publicado: (2015)

Wide complex tachycardia in a patient with pre-excitation: What is the mechanism?
por: Yeo, Colin, et al.
Publicado: (2017)

Tachycardia-induced cardiomyopathy long after a pacemaker implantation for the treatment of unusual 2:1 atrioventricular block: What is the mechanism?
por: Sairaku, Akinori, et al.
Publicado: (2015)

All that glitters is not gold
por: Mizumoto, Junki, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_h7dno9ett75p98v20kivfe0fld