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Development and verification of an immune-related gene prognostic index for gastric cancer
Immune checkpoint inhibitor (ICI) therapy is an emerging and effective approach to the treatment of gastric cancer (GC). However, the low response rate of GC patients to ICI therapy is a major limitation of ICI therapy. We investigated the transcriptomic signature of immune genes in GC could provide...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9489759/ https://www.ncbi.nlm.nih.gov/pubmed/36127384 http://dx.doi.org/10.1038/s41598-022-20007-y |
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author | Zhang, Chen Liu, Tao Wang, Jian Zhang, JianTao |
author_facet | Zhang, Chen Liu, Tao Wang, Jian Zhang, JianTao |
author_sort | Zhang, Chen |
collection | PubMed |
description | Immune checkpoint inhibitor (ICI) therapy is an emerging and effective approach to the treatment of gastric cancer (GC). However, the low response rate of GC patients to ICI therapy is a major limitation of ICI therapy. We investigated the transcriptomic signature of immune genes in GC could provide a comprehensive understanding of the tumor microenvironment (TME) and identify a valuable biomarker to predict the response of GC patients receiving immunotherapy. We performed the weighted gene co-expression network analysis (WGCNA) to determine immune-related hub genes that differentially expressed in the GC dataset based on The Cancer Genome Atlas (TCGA). After that, univariate and multivariate Cox regression was performed to recognize prognostic genes associated with overall survival and to develop an immune-related gene prognostic index (IRGPI). Furthermore, we explored the possible correlation between IRGPI and immune cell infiltration and immunotherapy efficacy. Notably, IRGPI can predict the prognosis of GC patients, as well as the response to immunotherapy. IRGPI as an immune-related prognostic biomarker might bring some potential implications for immunotherapy strategies in GC. |
format | Online Article Text |
id | pubmed-9489759 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-94897592022-09-22 Development and verification of an immune-related gene prognostic index for gastric cancer Zhang, Chen Liu, Tao Wang, Jian Zhang, JianTao Sci Rep Article Immune checkpoint inhibitor (ICI) therapy is an emerging and effective approach to the treatment of gastric cancer (GC). However, the low response rate of GC patients to ICI therapy is a major limitation of ICI therapy. We investigated the transcriptomic signature of immune genes in GC could provide a comprehensive understanding of the tumor microenvironment (TME) and identify a valuable biomarker to predict the response of GC patients receiving immunotherapy. We performed the weighted gene co-expression network analysis (WGCNA) to determine immune-related hub genes that differentially expressed in the GC dataset based on The Cancer Genome Atlas (TCGA). After that, univariate and multivariate Cox regression was performed to recognize prognostic genes associated with overall survival and to develop an immune-related gene prognostic index (IRGPI). Furthermore, we explored the possible correlation between IRGPI and immune cell infiltration and immunotherapy efficacy. Notably, IRGPI can predict the prognosis of GC patients, as well as the response to immunotherapy. IRGPI as an immune-related prognostic biomarker might bring some potential implications for immunotherapy strategies in GC. Nature Publishing Group UK 2022-09-20 /pmc/articles/PMC9489759/ /pubmed/36127384 http://dx.doi.org/10.1038/s41598-022-20007-y Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Zhang, Chen Liu, Tao Wang, Jian Zhang, JianTao Development and verification of an immune-related gene prognostic index for gastric cancer |
title | Development and verification of an immune-related gene prognostic index for gastric cancer |
title_full | Development and verification of an immune-related gene prognostic index for gastric cancer |
title_fullStr | Development and verification of an immune-related gene prognostic index for gastric cancer |
title_full_unstemmed | Development and verification of an immune-related gene prognostic index for gastric cancer |
title_short | Development and verification of an immune-related gene prognostic index for gastric cancer |
title_sort | development and verification of an immune-related gene prognostic index for gastric cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9489759/ https://www.ncbi.nlm.nih.gov/pubmed/36127384 http://dx.doi.org/10.1038/s41598-022-20007-y |
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