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The seen and the unseen: Molecular classification and image based-analysis of gastrointestinal cancers

Gastrointestinal cancers account for 22.5% of cancer related deaths worldwide and represent circa 20% of all cancers. In the last decades, we have witnessed a shift from histology-based to molecular-based classifications using genomic, epigenomic, and transcriptomic data. The molecular based classif...

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Autores principales: Minciuna, Corina-Elena, Tanase, Mihai, Manuc, Teodora Ecaterina, Tudor, Stefan, Herlea, Vlad, Dragomir, Mihnea P., Calin, George A., Vasilescu, Catalin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9489806/
https://www.ncbi.nlm.nih.gov/pubmed/36187924
http://dx.doi.org/10.1016/j.csbj.2022.09.010
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author Minciuna, Corina-Elena
Tanase, Mihai
Manuc, Teodora Ecaterina
Tudor, Stefan
Herlea, Vlad
Dragomir, Mihnea P.
Calin, George A.
Vasilescu, Catalin
author_facet Minciuna, Corina-Elena
Tanase, Mihai
Manuc, Teodora Ecaterina
Tudor, Stefan
Herlea, Vlad
Dragomir, Mihnea P.
Calin, George A.
Vasilescu, Catalin
author_sort Minciuna, Corina-Elena
collection PubMed
description Gastrointestinal cancers account for 22.5% of cancer related deaths worldwide and represent circa 20% of all cancers. In the last decades, we have witnessed a shift from histology-based to molecular-based classifications using genomic, epigenomic, and transcriptomic data. The molecular based classification revealed new prognostic markers and may aid the therapy selection. Because of the high-costs to perform a molecular classification, in recent years immunohistochemistry-based surrogate classification were developed which permit the stratification of patients, and in parallel multiple groups developed hematoxylin and eosin whole slide image analysis for sub-classifying these entities. Hence, we are witnessing a return to an image-based classification with the purpose to infer hidden information from routine histology images that would permit to detect the patients that respond to specific therapies and would be able to predict their outcome. In this review paper, we will discuss the current histological, molecular, and immunohistochemical classifications of the most common gastrointestinal cancers, gastric adenocarcinoma, and colorectal adenocarcinoma, and will present key aspects for developing a new artificial intelligence aided image-based classification of these malignancies.
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spelling pubmed-94898062022-09-30 The seen and the unseen: Molecular classification and image based-analysis of gastrointestinal cancers Minciuna, Corina-Elena Tanase, Mihai Manuc, Teodora Ecaterina Tudor, Stefan Herlea, Vlad Dragomir, Mihnea P. Calin, George A. Vasilescu, Catalin Comput Struct Biotechnol J Mini Review Gastrointestinal cancers account for 22.5% of cancer related deaths worldwide and represent circa 20% of all cancers. In the last decades, we have witnessed a shift from histology-based to molecular-based classifications using genomic, epigenomic, and transcriptomic data. The molecular based classification revealed new prognostic markers and may aid the therapy selection. Because of the high-costs to perform a molecular classification, in recent years immunohistochemistry-based surrogate classification were developed which permit the stratification of patients, and in parallel multiple groups developed hematoxylin and eosin whole slide image analysis for sub-classifying these entities. Hence, we are witnessing a return to an image-based classification with the purpose to infer hidden information from routine histology images that would permit to detect the patients that respond to specific therapies and would be able to predict their outcome. In this review paper, we will discuss the current histological, molecular, and immunohistochemical classifications of the most common gastrointestinal cancers, gastric adenocarcinoma, and colorectal adenocarcinoma, and will present key aspects for developing a new artificial intelligence aided image-based classification of these malignancies. Research Network of Computational and Structural Biotechnology 2022-09-12 /pmc/articles/PMC9489806/ /pubmed/36187924 http://dx.doi.org/10.1016/j.csbj.2022.09.010 Text en © 2022 Published by Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Mini Review
Minciuna, Corina-Elena
Tanase, Mihai
Manuc, Teodora Ecaterina
Tudor, Stefan
Herlea, Vlad
Dragomir, Mihnea P.
Calin, George A.
Vasilescu, Catalin
The seen and the unseen: Molecular classification and image based-analysis of gastrointestinal cancers
title The seen and the unseen: Molecular classification and image based-analysis of gastrointestinal cancers
title_full The seen and the unseen: Molecular classification and image based-analysis of gastrointestinal cancers
title_fullStr The seen and the unseen: Molecular classification and image based-analysis of gastrointestinal cancers
title_full_unstemmed The seen and the unseen: Molecular classification and image based-analysis of gastrointestinal cancers
title_short The seen and the unseen: Molecular classification and image based-analysis of gastrointestinal cancers
title_sort seen and the unseen: molecular classification and image based-analysis of gastrointestinal cancers
topic Mini Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9489806/
https://www.ncbi.nlm.nih.gov/pubmed/36187924
http://dx.doi.org/10.1016/j.csbj.2022.09.010
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