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Construction of five cuproptosis-related lncRNA signature for predicting prognosis and immune activity in skin cutaneous melanoma
Cuproptosis is a newly discovered new mechanism of programmed cell death, and its unique pathway to regulate cell death is thought to have a unique role in understanding cancer progression and guiding cancer therapy. However, this regulation has not been studied in SKCM at present. In this study, da...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9490379/ https://www.ncbi.nlm.nih.gov/pubmed/36160015 http://dx.doi.org/10.3389/fgene.2022.972899 |
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author | Yang, Xiaojing Wang, Xing Sun, Xinti Xiao, Meng Fan, Liyun Su, Yunwei Xue, Lu Luo, Suju Hou, Shuping Wang, Huiping |
author_facet | Yang, Xiaojing Wang, Xing Sun, Xinti Xiao, Meng Fan, Liyun Su, Yunwei Xue, Lu Luo, Suju Hou, Shuping Wang, Huiping |
author_sort | Yang, Xiaojing |
collection | PubMed |
description | Cuproptosis is a newly discovered new mechanism of programmed cell death, and its unique pathway to regulate cell death is thought to have a unique role in understanding cancer progression and guiding cancer therapy. However, this regulation has not been studied in SKCM at present. In this study, data on Skin Cutaneous Melanoma (SKCM) patients were downloaded from the TCGA database. We screened the genes related to cuproptosis from the published papers and confirmed the lncRNAs related to them. We applied Univariate/multivariate and LASSO Cox regression algorithms, and finally identified 5 cuproptosis-related lncRNAs for constructing prognosis prediction models (VIM-AS1, AC012443.2, MALINC1, AL354696.2, HSD11B1-AS1). The reliability and validity test of the model indicated that the model could well distinguish the prognosis and survival of SKCM patients. Next, immune microenvironment, immunotherapy analysis, and functional enrichment analysis were also performed. In conclusion, this study is the first analysis based on cuproptosis-related lncRNAs in SKCM and aims to open up new directions for SKCM therapy. |
format | Online Article Text |
id | pubmed-9490379 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-94903792022-09-22 Construction of five cuproptosis-related lncRNA signature for predicting prognosis and immune activity in skin cutaneous melanoma Yang, Xiaojing Wang, Xing Sun, Xinti Xiao, Meng Fan, Liyun Su, Yunwei Xue, Lu Luo, Suju Hou, Shuping Wang, Huiping Front Genet Genetics Cuproptosis is a newly discovered new mechanism of programmed cell death, and its unique pathway to regulate cell death is thought to have a unique role in understanding cancer progression and guiding cancer therapy. However, this regulation has not been studied in SKCM at present. In this study, data on Skin Cutaneous Melanoma (SKCM) patients were downloaded from the TCGA database. We screened the genes related to cuproptosis from the published papers and confirmed the lncRNAs related to them. We applied Univariate/multivariate and LASSO Cox regression algorithms, and finally identified 5 cuproptosis-related lncRNAs for constructing prognosis prediction models (VIM-AS1, AC012443.2, MALINC1, AL354696.2, HSD11B1-AS1). The reliability and validity test of the model indicated that the model could well distinguish the prognosis and survival of SKCM patients. Next, immune microenvironment, immunotherapy analysis, and functional enrichment analysis were also performed. In conclusion, this study is the first analysis based on cuproptosis-related lncRNAs in SKCM and aims to open up new directions for SKCM therapy. Frontiers Media S.A. 2022-09-07 /pmc/articles/PMC9490379/ /pubmed/36160015 http://dx.doi.org/10.3389/fgene.2022.972899 Text en Copyright © 2022 Yang, Wang, Sun, Xiao, Fan, Su, Xue, Luo, Hou and Wang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Yang, Xiaojing Wang, Xing Sun, Xinti Xiao, Meng Fan, Liyun Su, Yunwei Xue, Lu Luo, Suju Hou, Shuping Wang, Huiping Construction of five cuproptosis-related lncRNA signature for predicting prognosis and immune activity in skin cutaneous melanoma |
title | Construction of five cuproptosis-related lncRNA signature for predicting prognosis and immune activity in skin cutaneous melanoma |
title_full | Construction of five cuproptosis-related lncRNA signature for predicting prognosis and immune activity in skin cutaneous melanoma |
title_fullStr | Construction of five cuproptosis-related lncRNA signature for predicting prognosis and immune activity in skin cutaneous melanoma |
title_full_unstemmed | Construction of five cuproptosis-related lncRNA signature for predicting prognosis and immune activity in skin cutaneous melanoma |
title_short | Construction of five cuproptosis-related lncRNA signature for predicting prognosis and immune activity in skin cutaneous melanoma |
title_sort | construction of five cuproptosis-related lncrna signature for predicting prognosis and immune activity in skin cutaneous melanoma |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9490379/ https://www.ncbi.nlm.nih.gov/pubmed/36160015 http://dx.doi.org/10.3389/fgene.2022.972899 |
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