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Collective adaptability in a replication network of minimal nucleobase sequences

A major challenge for understanding the origins of life is to explore how replication networks can engage in an evolutionary process. Herein, we shed light on this problem by implementing a network constituted by two different types of extremely simple biological components: the amino acid cysteine...

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Autores principales: Vela-Gallego, Sonia, Pardo-Botero, Zulay, Moya, Cristian, de la Escosura, Andrés
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society of Chemistry 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9491195/
https://www.ncbi.nlm.nih.gov/pubmed/36320689
http://dx.doi.org/10.1039/d2sc02419e
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author Vela-Gallego, Sonia
Pardo-Botero, Zulay
Moya, Cristian
de la Escosura, Andrés
author_facet Vela-Gallego, Sonia
Pardo-Botero, Zulay
Moya, Cristian
de la Escosura, Andrés
author_sort Vela-Gallego, Sonia
collection PubMed
description A major challenge for understanding the origins of life is to explore how replication networks can engage in an evolutionary process. Herein, we shed light on this problem by implementing a network constituted by two different types of extremely simple biological components: the amino acid cysteine and the canonical nucleobases adenine and thymine, connected through amide bonds to the cysteine amino group and oxidation of its thiol into three possible disulfides. Supramolecular and kinetic analyses revealed that both self- and mutual interactions between such dinucleobase compounds drive their assembly and replication pathways. Those pathways involving sequence complementarity led to enhanced replication rates, suggesting a potential bias for selection. The interplay of synergistic dynamics and competition between replicators was then simulated, under conditions that are not easily accessible with experiments, in an open reactor parametrized and constrained with the unprecedentedly complete experimental kinetic data obtained for our replicative network. Interestingly, the simulations show bistability, as a selective amplification of different species depending on the initial mixture composition. Overall, this network configuration can favor a collective adaptability to changes in the availability of feedstock molecules, with disulfide exchange reactions serving as 'wires' that connect the different individual auto- and cross-catalytic pathways.
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spelling pubmed-94911952022-10-31 Collective adaptability in a replication network of minimal nucleobase sequences Vela-Gallego, Sonia Pardo-Botero, Zulay Moya, Cristian de la Escosura, Andrés Chem Sci Chemistry A major challenge for understanding the origins of life is to explore how replication networks can engage in an evolutionary process. Herein, we shed light on this problem by implementing a network constituted by two different types of extremely simple biological components: the amino acid cysteine and the canonical nucleobases adenine and thymine, connected through amide bonds to the cysteine amino group and oxidation of its thiol into three possible disulfides. Supramolecular and kinetic analyses revealed that both self- and mutual interactions between such dinucleobase compounds drive their assembly and replication pathways. Those pathways involving sequence complementarity led to enhanced replication rates, suggesting a potential bias for selection. The interplay of synergistic dynamics and competition between replicators was then simulated, under conditions that are not easily accessible with experiments, in an open reactor parametrized and constrained with the unprecedentedly complete experimental kinetic data obtained for our replicative network. Interestingly, the simulations show bistability, as a selective amplification of different species depending on the initial mixture composition. Overall, this network configuration can favor a collective adaptability to changes in the availability of feedstock molecules, with disulfide exchange reactions serving as 'wires' that connect the different individual auto- and cross-catalytic pathways. The Royal Society of Chemistry 2022-08-11 /pmc/articles/PMC9491195/ /pubmed/36320689 http://dx.doi.org/10.1039/d2sc02419e Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/
spellingShingle Chemistry
Vela-Gallego, Sonia
Pardo-Botero, Zulay
Moya, Cristian
de la Escosura, Andrés
Collective adaptability in a replication network of minimal nucleobase sequences
title Collective adaptability in a replication network of minimal nucleobase sequences
title_full Collective adaptability in a replication network of minimal nucleobase sequences
title_fullStr Collective adaptability in a replication network of minimal nucleobase sequences
title_full_unstemmed Collective adaptability in a replication network of minimal nucleobase sequences
title_short Collective adaptability in a replication network of minimal nucleobase sequences
title_sort collective adaptability in a replication network of minimal nucleobase sequences
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9491195/
https://www.ncbi.nlm.nih.gov/pubmed/36320689
http://dx.doi.org/10.1039/d2sc02419e
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