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Collective adaptability in a replication network of minimal nucleobase sequences
A major challenge for understanding the origins of life is to explore how replication networks can engage in an evolutionary process. Herein, we shed light on this problem by implementing a network constituted by two different types of extremely simple biological components: the amino acid cysteine...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9491195/ https://www.ncbi.nlm.nih.gov/pubmed/36320689 http://dx.doi.org/10.1039/d2sc02419e |
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author | Vela-Gallego, Sonia Pardo-Botero, Zulay Moya, Cristian de la Escosura, Andrés |
author_facet | Vela-Gallego, Sonia Pardo-Botero, Zulay Moya, Cristian de la Escosura, Andrés |
author_sort | Vela-Gallego, Sonia |
collection | PubMed |
description | A major challenge for understanding the origins of life is to explore how replication networks can engage in an evolutionary process. Herein, we shed light on this problem by implementing a network constituted by two different types of extremely simple biological components: the amino acid cysteine and the canonical nucleobases adenine and thymine, connected through amide bonds to the cysteine amino group and oxidation of its thiol into three possible disulfides. Supramolecular and kinetic analyses revealed that both self- and mutual interactions between such dinucleobase compounds drive their assembly and replication pathways. Those pathways involving sequence complementarity led to enhanced replication rates, suggesting a potential bias for selection. The interplay of synergistic dynamics and competition between replicators was then simulated, under conditions that are not easily accessible with experiments, in an open reactor parametrized and constrained with the unprecedentedly complete experimental kinetic data obtained for our replicative network. Interestingly, the simulations show bistability, as a selective amplification of different species depending on the initial mixture composition. Overall, this network configuration can favor a collective adaptability to changes in the availability of feedstock molecules, with disulfide exchange reactions serving as 'wires' that connect the different individual auto- and cross-catalytic pathways. |
format | Online Article Text |
id | pubmed-9491195 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-94911952022-10-31 Collective adaptability in a replication network of minimal nucleobase sequences Vela-Gallego, Sonia Pardo-Botero, Zulay Moya, Cristian de la Escosura, Andrés Chem Sci Chemistry A major challenge for understanding the origins of life is to explore how replication networks can engage in an evolutionary process. Herein, we shed light on this problem by implementing a network constituted by two different types of extremely simple biological components: the amino acid cysteine and the canonical nucleobases adenine and thymine, connected through amide bonds to the cysteine amino group and oxidation of its thiol into three possible disulfides. Supramolecular and kinetic analyses revealed that both self- and mutual interactions between such dinucleobase compounds drive their assembly and replication pathways. Those pathways involving sequence complementarity led to enhanced replication rates, suggesting a potential bias for selection. The interplay of synergistic dynamics and competition between replicators was then simulated, under conditions that are not easily accessible with experiments, in an open reactor parametrized and constrained with the unprecedentedly complete experimental kinetic data obtained for our replicative network. Interestingly, the simulations show bistability, as a selective amplification of different species depending on the initial mixture composition. Overall, this network configuration can favor a collective adaptability to changes in the availability of feedstock molecules, with disulfide exchange reactions serving as 'wires' that connect the different individual auto- and cross-catalytic pathways. The Royal Society of Chemistry 2022-08-11 /pmc/articles/PMC9491195/ /pubmed/36320689 http://dx.doi.org/10.1039/d2sc02419e Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/ |
spellingShingle | Chemistry Vela-Gallego, Sonia Pardo-Botero, Zulay Moya, Cristian de la Escosura, Andrés Collective adaptability in a replication network of minimal nucleobase sequences |
title | Collective adaptability in a replication network of minimal nucleobase sequences |
title_full | Collective adaptability in a replication network of minimal nucleobase sequences |
title_fullStr | Collective adaptability in a replication network of minimal nucleobase sequences |
title_full_unstemmed | Collective adaptability in a replication network of minimal nucleobase sequences |
title_short | Collective adaptability in a replication network of minimal nucleobase sequences |
title_sort | collective adaptability in a replication network of minimal nucleobase sequences |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9491195/ https://www.ncbi.nlm.nih.gov/pubmed/36320689 http://dx.doi.org/10.1039/d2sc02419e |
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