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Pan-cancer analysis of prognostic and immunological role of DTYMK in human tumors

Background: Deoxythymidylate kinase (DTYMK) has been reported to correlate with the progression of hepatocellular carcinoma. However, the role of DTYMK in human cancers is not studied. In this study, we studied the prognostic value, functional states, and correlations with immune infiltration of DTY...

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Autores principales: Zhao, Huihui, Xie, Rongrong, Zhang, Chenxi, Lu, Guojun, Kong, Hui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9493117/
https://www.ncbi.nlm.nih.gov/pubmed/36159971
http://dx.doi.org/10.3389/fgene.2022.989460
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author Zhao, Huihui
Xie, Rongrong
Zhang, Chenxi
Lu, Guojun
Kong, Hui
author_facet Zhao, Huihui
Xie, Rongrong
Zhang, Chenxi
Lu, Guojun
Kong, Hui
author_sort Zhao, Huihui
collection PubMed
description Background: Deoxythymidylate kinase (DTYMK) has been reported to correlate with the progression of hepatocellular carcinoma. However, the role of DTYMK in human cancers is not studied. In this study, we studied the prognostic value, functional states, and correlations with immune infiltration of DTYMK in human cancers. Methods: The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression (GTEx), UALCAN, Clinical Proteomic Tumor Analysis Consortium (CPTAC), the search tool for the retrieval of interacting genes (STRING), GeneMANIA, cBioPortal, Cancer Single-cell State Atlas (CancerSEA), and Tumor IMmune Estimation Resource (TIMER) databases were utilized to analyze DTYMK in cancers. Results: In general, DTYMK is abnormally expressed between most human cancer and normal tissues from a pan-cancer perspective. DTYMK can be used as a diagnostic biomarker to differentiate tumor tissues from normal tissues in most tumors. Upregulation of DTYMK predicted poor survival status in most cancer types in TCGA. Moreover, DTYMK expression was correlated with the T stage in ACC, BRCA, KIRC, LIHC, and LUAD, with the N stage in BLCA, HNSC, KICH, KIRC, LUAD, LUSC, and THCA, with the M stage in ACC, KIRC, KIRP, and LUAD, with TNM stage in ACC, KIRC, LIHC, LUAD, and LUSC. In addition, based on single-cell sequencing data, we concluded that the expression of DTYMK was correlated with the functional status of the cell cycle, DNA damage, DNA repair, invasion, EMT, and proliferation. Finally, DTYMK expression was correlated with six infiltrating immune cells, including B cells, CD4(+) T cells, CD8(+) T cells, neutrophils, macrophages, and dendritic cells by investigating TIMER. Conclusion: Our findings suggested that abnormally expressed DTYMK was correlated with poor survival, malignant functional status, and immune infiltrates. DTYMK might be served as a potential biomarker for diagnosis and poor prognosis in various cancer types. DTYMK might act as a potential target for immune therapy.
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spelling pubmed-94931172022-09-23 Pan-cancer analysis of prognostic and immunological role of DTYMK in human tumors Zhao, Huihui Xie, Rongrong Zhang, Chenxi Lu, Guojun Kong, Hui Front Genet Genetics Background: Deoxythymidylate kinase (DTYMK) has been reported to correlate with the progression of hepatocellular carcinoma. However, the role of DTYMK in human cancers is not studied. In this study, we studied the prognostic value, functional states, and correlations with immune infiltration of DTYMK in human cancers. Methods: The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression (GTEx), UALCAN, Clinical Proteomic Tumor Analysis Consortium (CPTAC), the search tool for the retrieval of interacting genes (STRING), GeneMANIA, cBioPortal, Cancer Single-cell State Atlas (CancerSEA), and Tumor IMmune Estimation Resource (TIMER) databases were utilized to analyze DTYMK in cancers. Results: In general, DTYMK is abnormally expressed between most human cancer and normal tissues from a pan-cancer perspective. DTYMK can be used as a diagnostic biomarker to differentiate tumor tissues from normal tissues in most tumors. Upregulation of DTYMK predicted poor survival status in most cancer types in TCGA. Moreover, DTYMK expression was correlated with the T stage in ACC, BRCA, KIRC, LIHC, and LUAD, with the N stage in BLCA, HNSC, KICH, KIRC, LUAD, LUSC, and THCA, with the M stage in ACC, KIRC, KIRP, and LUAD, with TNM stage in ACC, KIRC, LIHC, LUAD, and LUSC. In addition, based on single-cell sequencing data, we concluded that the expression of DTYMK was correlated with the functional status of the cell cycle, DNA damage, DNA repair, invasion, EMT, and proliferation. Finally, DTYMK expression was correlated with six infiltrating immune cells, including B cells, CD4(+) T cells, CD8(+) T cells, neutrophils, macrophages, and dendritic cells by investigating TIMER. Conclusion: Our findings suggested that abnormally expressed DTYMK was correlated with poor survival, malignant functional status, and immune infiltrates. DTYMK might be served as a potential biomarker for diagnosis and poor prognosis in various cancer types. DTYMK might act as a potential target for immune therapy. Frontiers Media S.A. 2022-09-08 /pmc/articles/PMC9493117/ /pubmed/36159971 http://dx.doi.org/10.3389/fgene.2022.989460 Text en Copyright © 2022 Zhao, Xie, Zhang, Lu and Kong. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Zhao, Huihui
Xie, Rongrong
Zhang, Chenxi
Lu, Guojun
Kong, Hui
Pan-cancer analysis of prognostic and immunological role of DTYMK in human tumors
title Pan-cancer analysis of prognostic and immunological role of DTYMK in human tumors
title_full Pan-cancer analysis of prognostic and immunological role of DTYMK in human tumors
title_fullStr Pan-cancer analysis of prognostic and immunological role of DTYMK in human tumors
title_full_unstemmed Pan-cancer analysis of prognostic and immunological role of DTYMK in human tumors
title_short Pan-cancer analysis of prognostic and immunological role of DTYMK in human tumors
title_sort pan-cancer analysis of prognostic and immunological role of dtymk in human tumors
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9493117/
https://www.ncbi.nlm.nih.gov/pubmed/36159971
http://dx.doi.org/10.3389/fgene.2022.989460
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