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(13)C metabolic flux analysis: Classification and characterization from the perspective of mathematical modeling and application in physiological research of neural cell

(13)C metabolic flux analysis ((13)C-MFA) has emerged as a forceful tool for quantifying in vivo metabolic pathway activity of different biological systems. This technology plays an important role in understanding intracellular metabolism and revealing patho-physiology mechanism. Recently, it has ev...

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Autores principales: Tian, Birui, Chen, Meifeng, Liu, Lunxian, Rui, Bin, Deng, Zhouhui, Zhang, Zhengdong, Shen, Tie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9493264/
https://www.ncbi.nlm.nih.gov/pubmed/36157075
http://dx.doi.org/10.3389/fnmol.2022.883466
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author Tian, Birui
Chen, Meifeng
Liu, Lunxian
Rui, Bin
Deng, Zhouhui
Zhang, Zhengdong
Shen, Tie
author_facet Tian, Birui
Chen, Meifeng
Liu, Lunxian
Rui, Bin
Deng, Zhouhui
Zhang, Zhengdong
Shen, Tie
author_sort Tian, Birui
collection PubMed
description (13)C metabolic flux analysis ((13)C-MFA) has emerged as a forceful tool for quantifying in vivo metabolic pathway activity of different biological systems. This technology plays an important role in understanding intracellular metabolism and revealing patho-physiology mechanism. Recently, it has evolved into a method family with great diversity in experiments, analytics, and mathematics. In this review, we classify and characterize the various branch of (13)C-MFA from a unified perspective of mathematical modeling. By linking different parts in the model to each step of its workflow, the specific technologies of (13)C-MFA are put into discussion, including the isotope labeling model (ILM), isotope pattern measuring technique, optimization algorithm and statistical method. Its application in physiological research in neural cell has also been reviewed.
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spelling pubmed-94932642022-09-23 (13)C metabolic flux analysis: Classification and characterization from the perspective of mathematical modeling and application in physiological research of neural cell Tian, Birui Chen, Meifeng Liu, Lunxian Rui, Bin Deng, Zhouhui Zhang, Zhengdong Shen, Tie Front Mol Neurosci Neuroscience (13)C metabolic flux analysis ((13)C-MFA) has emerged as a forceful tool for quantifying in vivo metabolic pathway activity of different biological systems. This technology plays an important role in understanding intracellular metabolism and revealing patho-physiology mechanism. Recently, it has evolved into a method family with great diversity in experiments, analytics, and mathematics. In this review, we classify and characterize the various branch of (13)C-MFA from a unified perspective of mathematical modeling. By linking different parts in the model to each step of its workflow, the specific technologies of (13)C-MFA are put into discussion, including the isotope labeling model (ILM), isotope pattern measuring technique, optimization algorithm and statistical method. Its application in physiological research in neural cell has also been reviewed. Frontiers Media S.A. 2022-09-08 /pmc/articles/PMC9493264/ /pubmed/36157075 http://dx.doi.org/10.3389/fnmol.2022.883466 Text en Copyright © 2022 Tian, Chen, Liu, Rui, Deng, Zhang and Shen. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Tian, Birui
Chen, Meifeng
Liu, Lunxian
Rui, Bin
Deng, Zhouhui
Zhang, Zhengdong
Shen, Tie
(13)C metabolic flux analysis: Classification and characterization from the perspective of mathematical modeling and application in physiological research of neural cell
title (13)C metabolic flux analysis: Classification and characterization from the perspective of mathematical modeling and application in physiological research of neural cell
title_full (13)C metabolic flux analysis: Classification and characterization from the perspective of mathematical modeling and application in physiological research of neural cell
title_fullStr (13)C metabolic flux analysis: Classification and characterization from the perspective of mathematical modeling and application in physiological research of neural cell
title_full_unstemmed (13)C metabolic flux analysis: Classification and characterization from the perspective of mathematical modeling and application in physiological research of neural cell
title_short (13)C metabolic flux analysis: Classification and characterization from the perspective of mathematical modeling and application in physiological research of neural cell
title_sort (13)c metabolic flux analysis: classification and characterization from the perspective of mathematical modeling and application in physiological research of neural cell
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9493264/
https://www.ncbi.nlm.nih.gov/pubmed/36157075
http://dx.doi.org/10.3389/fnmol.2022.883466
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