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Prediction of Potential Natural Antibiotics Plants Based on Jamu Formula Using Random Forest Classifier

Jamu is the traditional Indonesian herbal medicine system that is considered to have many benefits such as serving as a cure for diseases or maintaining sound health. A Jamu medicine is generally made from a mixture of several herbs. Natural antibiotics can provide a way to handle the problem of ant...

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Autores principales: Nasution, Ahmad Kamal, Wijaya, Sony Hartono, Gao, Pei, Islam, Rumman Mahfujul, Huang, Ming, Ono, Naoaki, Kanaya, Shigehiko, Altaf-Ul-Amin, Md.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9495033/
https://www.ncbi.nlm.nih.gov/pubmed/36139978
http://dx.doi.org/10.3390/antibiotics11091199
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author Nasution, Ahmad Kamal
Wijaya, Sony Hartono
Gao, Pei
Islam, Rumman Mahfujul
Huang, Ming
Ono, Naoaki
Kanaya, Shigehiko
Altaf-Ul-Amin, Md.
author_facet Nasution, Ahmad Kamal
Wijaya, Sony Hartono
Gao, Pei
Islam, Rumman Mahfujul
Huang, Ming
Ono, Naoaki
Kanaya, Shigehiko
Altaf-Ul-Amin, Md.
author_sort Nasution, Ahmad Kamal
collection PubMed
description Jamu is the traditional Indonesian herbal medicine system that is considered to have many benefits such as serving as a cure for diseases or maintaining sound health. A Jamu medicine is generally made from a mixture of several herbs. Natural antibiotics can provide a way to handle the problem of antibiotic resistance. This research aims to discover the potential of herbal plants as natural antibiotic candidates based on a machine learning approach. Our input data consists of a list of herbal formulas with plants as their constituents. The target class corresponds to bacterial diseases that can be cured by herbal formulas. The best model has been observed by implementing the Random Forest (RF) algorithm. For 10-fold cross-validations, the maximum accuracy, recall, and precision are 91.10%, 91.10%, and 90.54% with standard deviations 1.05, 1.05, and 1.48, respectively, which imply that the model obtained is good and robust. This study has shown that 14 plants can be potentially used as natural antibiotic candidates. Furthermore, according to scientific journals, 10 of the 14 selected plants have direct or indirect antibacterial activity.
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spelling pubmed-94950332022-09-23 Prediction of Potential Natural Antibiotics Plants Based on Jamu Formula Using Random Forest Classifier Nasution, Ahmad Kamal Wijaya, Sony Hartono Gao, Pei Islam, Rumman Mahfujul Huang, Ming Ono, Naoaki Kanaya, Shigehiko Altaf-Ul-Amin, Md. Antibiotics (Basel) Article Jamu is the traditional Indonesian herbal medicine system that is considered to have many benefits such as serving as a cure for diseases or maintaining sound health. A Jamu medicine is generally made from a mixture of several herbs. Natural antibiotics can provide a way to handle the problem of antibiotic resistance. This research aims to discover the potential of herbal plants as natural antibiotic candidates based on a machine learning approach. Our input data consists of a list of herbal formulas with plants as their constituents. The target class corresponds to bacterial diseases that can be cured by herbal formulas. The best model has been observed by implementing the Random Forest (RF) algorithm. For 10-fold cross-validations, the maximum accuracy, recall, and precision are 91.10%, 91.10%, and 90.54% with standard deviations 1.05, 1.05, and 1.48, respectively, which imply that the model obtained is good and robust. This study has shown that 14 plants can be potentially used as natural antibiotic candidates. Furthermore, according to scientific journals, 10 of the 14 selected plants have direct or indirect antibacterial activity. MDPI 2022-09-05 /pmc/articles/PMC9495033/ /pubmed/36139978 http://dx.doi.org/10.3390/antibiotics11091199 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Nasution, Ahmad Kamal
Wijaya, Sony Hartono
Gao, Pei
Islam, Rumman Mahfujul
Huang, Ming
Ono, Naoaki
Kanaya, Shigehiko
Altaf-Ul-Amin, Md.
Prediction of Potential Natural Antibiotics Plants Based on Jamu Formula Using Random Forest Classifier
title Prediction of Potential Natural Antibiotics Plants Based on Jamu Formula Using Random Forest Classifier
title_full Prediction of Potential Natural Antibiotics Plants Based on Jamu Formula Using Random Forest Classifier
title_fullStr Prediction of Potential Natural Antibiotics Plants Based on Jamu Formula Using Random Forest Classifier
title_full_unstemmed Prediction of Potential Natural Antibiotics Plants Based on Jamu Formula Using Random Forest Classifier
title_short Prediction of Potential Natural Antibiotics Plants Based on Jamu Formula Using Random Forest Classifier
title_sort prediction of potential natural antibiotics plants based on jamu formula using random forest classifier
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9495033/
https://www.ncbi.nlm.nih.gov/pubmed/36139978
http://dx.doi.org/10.3390/antibiotics11091199
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