Cargando…

Modulating Gene Expression within a Microbiome Based on Computational Models

SIMPLE SUMMARY: Development of computational biology methodologies has provided comprehensive understanding of the complexity of microbiomes, and the extensive ways in which they influence their environment. This has awakened a new research goal, aiming to not only understand the mechanisms in which...

Descripción completa

Detalles Bibliográficos
Autores principales:	Chitayat Levi, Liyam, Rippin, Ido, Ben Tulila, Moran, Galron, Rotem, Tuller, Tamir
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2022
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9495703/ https://www.ncbi.nlm.nih.gov/pubmed/36138780 http://dx.doi.org/10.3390/biology11091301

Ejemplares similares

Accurate, Model-Based Tuning of Synthetic Gene Expression Using Introns in S. cerevisiae
por: Yofe, Ido, et al.
Publicado: (2014)

Unsupervised detection of regulatory gene expression information in different genomic regions enables gene expression ranking
por: Zafrir, Zohar, et al.
Publicado: (2017)

Codon-based indices for modeling gene expression and transcript evolution
por: Bahiri-Elitzur, Shir, et al.
Publicado: (2021)

Entrainment to Periodic Initiation and Transition Rates in a Computational Model for Gene Translation
por: Margaliot, Michael, et al.
Publicado: (2014)

Multiple roles of the coding sequence 5′ end in gene expression regulation
por: Tuller, Tamir, et al.
Publicado: (2015)

Genome-Scale Analysis of Perturbations in Translation Elongation Based on a Computational Model
por: Levin, Doron, et al.
Publicado: (2018)

Transcript features alone enable accurate prediction and understanding of gene expression in S. cerevisiae
por: Zur, Hadas, et al.
Publicado: (2013)

Novel insights into gene expression regulation during meiosis revealed by translation elongation dynamics
por: Sabi, Renana, et al.
Publicado: (2019)

Determinants of efficient modulation of ribosomal traffic jams
por: Vinokour, Sophie, et al.
Publicado: (2021)

Analysis of Coevolving Gene Families Using Mutually Exclusive Orthologous Modules
por: Zhang, Xiuwei, et al.
Publicado: (2011)

Evolutionary rate and gene expression across different brain regions
por: Tuller, Tamir, et al.
Publicado: (2008)

Computational analysis of nascent peptides that induce ribosome stalling and their proteomic distribution in Saccharomyces cerevisiae
por: Sabi, Renana, et al.
Publicado: (2017)

The Effect of Dysregulation of tRNA Genes and Translation Efficiency Mutations in Cancer and Neurodegeneration
por: Tuller, Tamir
Publicado: (2012)

Computational analysis of the oscillatory behavior at the translation level induced by mRNA levels oscillations due to finite intracellular resources
por: Zarai, Yoram, et al.
Publicado: (2018)

Correction: Computational analysis of the oscillatory behavior at the translation level induced by mRNA levels oscillations due to finite intracellular resources
por: Zarai, Yoram, et al.
Publicado: (2019)

Prediction of acute multiple sclerosis relapses by transcription levels of peripheral blood cells
por: Gurevich, Michael, et al.
Publicado: (2009)

Discovering local patterns of co - evolution: computational aspects and biological examples
por: Tuller, Tamir, et al.
Publicado: (2010)

Co-evolutionary Models for Reconstructing Ancestral Genomic Sequences: Computational Issues and Biological Examples
por: Tuller, Tamir, et al.
Publicado: (2009)

Association between translation efficiency and horizontal gene transfer within microbial communities
por: Tuller, Tamir, et al.
Publicado: (2011)

Efficient algorithms for reconstructing gene content by co-evolution
por: Birin, Hadas, et al.
Publicado: (2011)

A computational predictor of the anaerobic mechanical power outputs from a clinical exercise stress test
por: Leopold, Efrat, et al.
Publicado: (2023)

Tracking the evolution of 3D gene organization demonstrates its connection to phenotypic divergence
por: Diament, Alon, et al.
Publicado: (2017)

Co-evolutionary networks of genes and cellular processes across fungal species
por: Tuller, Tamir, et al.
Publicado: (2009)

Mechanisms and Therapeutic Implications of GSK-3 in Treating Neurodegeneration
por: Rippin, Ido, et al.
Publicado: (2021)

Modelling the Efficiency of Codon–tRNA Interactions Based on Codon Usage Bias
por: Sabi, Renana, et al.
Publicado: (2014)

Predictive biophysical modeling and understanding of the dynamics of mRNA translation and its evolution
por: Zur, Hadas, et al.
Publicado: (2016)

Modeling the ribosomal small subunit dynamic in Saccharomyces cerevisiae based on TCP-seq data
por: Neumann, Tamar, et al.
Publicado: (2022)

Whole cell biophysical modeling of codon-tRNA competition reveals novel insights related to translation dynamics
por: Levin, Doron, et al.
Publicado: (2020)

High-resolution modeling of the selection on local mRNA folding strength in coding sequences across the tree of life
por: Peeri, Michael, et al.
Publicado: (2020)

Genome scale analysis of Escherichia coli with a comprehensive prokaryotic sequence-based biophysical model of translation initiation and elongation
por: Shaham, Gilad, et al.
Publicado: (2018)

Significant differences in terms of codon usage bias between bacteriophage early and late genes: a comparative genomics analysis
por: Mioduser, Oriah, et al.
Publicado: (2017)

Genome-wide analysis of horizontally acquired genes in the genus Mycobacterium
por: Panda, Arup, et al.
Publicado: (2018)

Modeling the effect of rRNA-mRNA interactions and mRNA folding on mRNA translation in chloroplasts
por: Carmel Ezra, Stav, et al.
Publicado: (2022)

Transient O(2) pulses direct Fe crystallinity and Fe(III)-reducer gene expression within a soil microbiome
por: Wilmoth, Jared Lee, et al.
Publicado: (2018)

A deterministic mathematical model for bidirectional excluded flow with Langmuir kinetics
por: Zarai, Yoram, et al.
Publicado: (2017)

Quantifying the Effect of Ribosomal Density on mRNA Stability
por: Edri, Shlomit, et al.
Publicado: (2014)

The effect of tRNA levels on decoding times of mRNA codons
por: Dana, Alexandra, et al.
Publicado: (2014)

Determinants of Translation Elongation Speed and Ribosomal Profiling Biases in Mouse Embryonic Stem Cells
por: Dana, Alexandra, et al.
Publicado: (2012)

New Universal Rules of Eukaryotic Translation Initiation Fidelity
por: Zur, Hadas, et al.
Publicado: (2013)

Improving 3D Genome Reconstructions Using Orthologous and Functional Constraints
por: Diament, Alon, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_ns7vkoshufhppke65todbe2m7d