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Prognostic Profiling of the EMT-Associated and Immunity-Related LncRNAs in Lung Squamous Cell Carcinomas

Lung squamous cell carcinoma (Lung SCC) is associated with metastatic disease, resulting in poor clinical prognosis and a low survival rate. The aberrant epithelial–mesenchymal transition (EMT) and long non-coding RNA (LncRNA) are critical attributors to tumor metastasis and invasiveness in Lung SCC...

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Autores principales: Sun, Qifeng, Gao, Yan, Zhang, Yehui, Cao, Hongmei, Liu, Jiajia, Neo, Shi-Yong, Chen, Keguang, Bi, Yanping, Wu, Jing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9497331/
https://www.ncbi.nlm.nih.gov/pubmed/36139456
http://dx.doi.org/10.3390/cells11182881
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author Sun, Qifeng
Gao, Yan
Zhang, Yehui
Cao, Hongmei
Liu, Jiajia
Neo, Shi-Yong
Chen, Keguang
Bi, Yanping
Wu, Jing
author_facet Sun, Qifeng
Gao, Yan
Zhang, Yehui
Cao, Hongmei
Liu, Jiajia
Neo, Shi-Yong
Chen, Keguang
Bi, Yanping
Wu, Jing
author_sort Sun, Qifeng
collection PubMed
description Lung squamous cell carcinoma (Lung SCC) is associated with metastatic disease, resulting in poor clinical prognosis and a low survival rate. The aberrant epithelial–mesenchymal transition (EMT) and long non-coding RNA (LncRNA) are critical attributors to tumor metastasis and invasiveness in Lung SCC. The present study divided lncRNAs into two subtypes, C1 and C2 (Cluster 1 and Cluster 2), according to the correlation of EMT activity within the public TCGA and GEO databases. Subsequently, the differential clinical characteristics, mutations, molecular pathways and immune cell deconvolution between C1 and C2 were evaluated. Lastly, we further identified three key lncRNAs (DNM3OS, MAGI2-AS3 and LINC01094) that were associated with EMT and, at the same time, prognostic for the clinical outcomes of Lung SCC patients. Our study may provide a new paradigm of metastasis-associated biomarkers for predicting the prognosis of Lung SCC.
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spelling pubmed-94973312022-09-23 Prognostic Profiling of the EMT-Associated and Immunity-Related LncRNAs in Lung Squamous Cell Carcinomas Sun, Qifeng Gao, Yan Zhang, Yehui Cao, Hongmei Liu, Jiajia Neo, Shi-Yong Chen, Keguang Bi, Yanping Wu, Jing Cells Article Lung squamous cell carcinoma (Lung SCC) is associated with metastatic disease, resulting in poor clinical prognosis and a low survival rate. The aberrant epithelial–mesenchymal transition (EMT) and long non-coding RNA (LncRNA) are critical attributors to tumor metastasis and invasiveness in Lung SCC. The present study divided lncRNAs into two subtypes, C1 and C2 (Cluster 1 and Cluster 2), according to the correlation of EMT activity within the public TCGA and GEO databases. Subsequently, the differential clinical characteristics, mutations, molecular pathways and immune cell deconvolution between C1 and C2 were evaluated. Lastly, we further identified three key lncRNAs (DNM3OS, MAGI2-AS3 and LINC01094) that were associated with EMT and, at the same time, prognostic for the clinical outcomes of Lung SCC patients. Our study may provide a new paradigm of metastasis-associated biomarkers for predicting the prognosis of Lung SCC. MDPI 2022-09-15 /pmc/articles/PMC9497331/ /pubmed/36139456 http://dx.doi.org/10.3390/cells11182881 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Sun, Qifeng
Gao, Yan
Zhang, Yehui
Cao, Hongmei
Liu, Jiajia
Neo, Shi-Yong
Chen, Keguang
Bi, Yanping
Wu, Jing
Prognostic Profiling of the EMT-Associated and Immunity-Related LncRNAs in Lung Squamous Cell Carcinomas
title Prognostic Profiling of the EMT-Associated and Immunity-Related LncRNAs in Lung Squamous Cell Carcinomas
title_full Prognostic Profiling of the EMT-Associated and Immunity-Related LncRNAs in Lung Squamous Cell Carcinomas
title_fullStr Prognostic Profiling of the EMT-Associated and Immunity-Related LncRNAs in Lung Squamous Cell Carcinomas
title_full_unstemmed Prognostic Profiling of the EMT-Associated and Immunity-Related LncRNAs in Lung Squamous Cell Carcinomas
title_short Prognostic Profiling of the EMT-Associated and Immunity-Related LncRNAs in Lung Squamous Cell Carcinomas
title_sort prognostic profiling of the emt-associated and immunity-related lncrnas in lung squamous cell carcinomas
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9497331/
https://www.ncbi.nlm.nih.gov/pubmed/36139456
http://dx.doi.org/10.3390/cells11182881
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