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RMTF-Net: Residual Mix Transformer Fusion Net for 2D Brain Tumor Segmentation

Due to the complexity of medical imaging techniques and the high heterogeneity of glioma surfaces, image segmentation of human gliomas is one of the most challenging tasks in medical image analysis. Current methods based on convolutional neural networks concentrate on feature extraction while ignori...

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Autores principales: Gai, Di, Zhang, Jiqian, Xiao, Yusong, Min, Weidong, Zhong, Yunfei, Zhong, Yuling
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9497369/
https://www.ncbi.nlm.nih.gov/pubmed/36138880
http://dx.doi.org/10.3390/brainsci12091145
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author Gai, Di
Zhang, Jiqian
Xiao, Yusong
Min, Weidong
Zhong, Yunfei
Zhong, Yuling
author_facet Gai, Di
Zhang, Jiqian
Xiao, Yusong
Min, Weidong
Zhong, Yunfei
Zhong, Yuling
author_sort Gai, Di
collection PubMed
description Due to the complexity of medical imaging techniques and the high heterogeneity of glioma surfaces, image segmentation of human gliomas is one of the most challenging tasks in medical image analysis. Current methods based on convolutional neural networks concentrate on feature extraction while ignoring the correlation between local and global. In this paper, we propose a residual mix transformer fusion net, namely RMTF-Net, for brain tumor segmentation. In the feature encoder, a residual mix transformer encoder including a mix transformer and a residual convolutional neural network (RCNN) is proposed. The mix transformer gives an overlapping patch embedding mechanism to cope with the loss of patch boundary information. Moreover, a parallel fusion strategy based on RCNN is utilized to obtain local–global balanced information. In the feature decoder, a global feature integration (GFI) module is applied, which can enrich the context with the global attention feature. Extensive experiments on brain tumor segmentation from LGG, BraTS2019 and BraTS2020 demonstrated that our proposed RMTF-Net is superior to existing state-of-art methods in subjective visual performance and objective evaluation.
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spelling pubmed-94973692022-09-23 RMTF-Net: Residual Mix Transformer Fusion Net for 2D Brain Tumor Segmentation Gai, Di Zhang, Jiqian Xiao, Yusong Min, Weidong Zhong, Yunfei Zhong, Yuling Brain Sci Article Due to the complexity of medical imaging techniques and the high heterogeneity of glioma surfaces, image segmentation of human gliomas is one of the most challenging tasks in medical image analysis. Current methods based on convolutional neural networks concentrate on feature extraction while ignoring the correlation between local and global. In this paper, we propose a residual mix transformer fusion net, namely RMTF-Net, for brain tumor segmentation. In the feature encoder, a residual mix transformer encoder including a mix transformer and a residual convolutional neural network (RCNN) is proposed. The mix transformer gives an overlapping patch embedding mechanism to cope with the loss of patch boundary information. Moreover, a parallel fusion strategy based on RCNN is utilized to obtain local–global balanced information. In the feature decoder, a global feature integration (GFI) module is applied, which can enrich the context with the global attention feature. Extensive experiments on brain tumor segmentation from LGG, BraTS2019 and BraTS2020 demonstrated that our proposed RMTF-Net is superior to existing state-of-art methods in subjective visual performance and objective evaluation. MDPI 2022-08-27 /pmc/articles/PMC9497369/ /pubmed/36138880 http://dx.doi.org/10.3390/brainsci12091145 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Gai, Di
Zhang, Jiqian
Xiao, Yusong
Min, Weidong
Zhong, Yunfei
Zhong, Yuling
RMTF-Net: Residual Mix Transformer Fusion Net for 2D Brain Tumor Segmentation
title RMTF-Net: Residual Mix Transformer Fusion Net for 2D Brain Tumor Segmentation
title_full RMTF-Net: Residual Mix Transformer Fusion Net for 2D Brain Tumor Segmentation
title_fullStr RMTF-Net: Residual Mix Transformer Fusion Net for 2D Brain Tumor Segmentation
title_full_unstemmed RMTF-Net: Residual Mix Transformer Fusion Net for 2D Brain Tumor Segmentation
title_short RMTF-Net: Residual Mix Transformer Fusion Net for 2D Brain Tumor Segmentation
title_sort rmtf-net: residual mix transformer fusion net for 2d brain tumor segmentation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9497369/
https://www.ncbi.nlm.nih.gov/pubmed/36138880
http://dx.doi.org/10.3390/brainsci12091145
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