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Identification of molecular patterns and diagnostic biomarkers in juvenile idiopathic arthritis based on the gene expression of m(6)A regulators

The role of N(6)-methyladenosine modification in immunity is increasingly being appreciated. However, the landscape of m(6)A regulators in juvenile idiopathic arthritis (JIA) is poorly understood. Thus, this study explored the impact of m(6)A modification and related lncRNAs in JIA immune microenvir...

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Autores principales: Zhang, Shibo, Qin, Jing, Zhao, Yuechao, Wang, Jian, Tian, Zhiliang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9497457/
https://www.ncbi.nlm.nih.gov/pubmed/36160781
http://dx.doi.org/10.3389/fped.2022.930119
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author Zhang, Shibo
Qin, Jing
Zhao, Yuechao
Wang, Jian
Tian, Zhiliang
author_facet Zhang, Shibo
Qin, Jing
Zhao, Yuechao
Wang, Jian
Tian, Zhiliang
author_sort Zhang, Shibo
collection PubMed
description The role of N(6)-methyladenosine modification in immunity is increasingly being appreciated. However, the landscape of m(6)A regulators in juvenile idiopathic arthritis (JIA) is poorly understood. Thus, this study explored the impact of m(6)A modification and related lncRNAs in JIA immune microenvironment. Fourteen m(6)A regulators and eight lncRNAs were identified as potential diagnostic biomarkers for JIA. Two diagnostic models for JIA were also constructed. The putative molecular regulatory mechanism of FTO-mediated m(6)A modification in JIA was hypothesized. Three distinct m(6)A patterns mediated by 26 m(6)A regulators and three diverse lncRNA clusters mediated by 405 lncRNAs were thoroughly investigated. They exhibited dramatically diverse immune microenvironments and expression of HLA genes. The identification of two separate subtypes of enthesitis-related arthritis implies that our work may aid in the establishment of a more precise categorization system for JIA. m(6)A modification-related genes were obtained, and their underlying biological functions were explored. The m(6)Ascore system developed for individual JIA patients may be utilized to evaluate the immunological state or molecular pattern, thereby offering therapy recommendations. In short, through the investigation of the m(6)A regulators in JIA, the current work may contribute to our knowledge of the pathophysiology of JIA.
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spelling pubmed-94974572022-09-23 Identification of molecular patterns and diagnostic biomarkers in juvenile idiopathic arthritis based on the gene expression of m(6)A regulators Zhang, Shibo Qin, Jing Zhao, Yuechao Wang, Jian Tian, Zhiliang Front Pediatr Pediatrics The role of N(6)-methyladenosine modification in immunity is increasingly being appreciated. However, the landscape of m(6)A regulators in juvenile idiopathic arthritis (JIA) is poorly understood. Thus, this study explored the impact of m(6)A modification and related lncRNAs in JIA immune microenvironment. Fourteen m(6)A regulators and eight lncRNAs were identified as potential diagnostic biomarkers for JIA. Two diagnostic models for JIA were also constructed. The putative molecular regulatory mechanism of FTO-mediated m(6)A modification in JIA was hypothesized. Three distinct m(6)A patterns mediated by 26 m(6)A regulators and three diverse lncRNA clusters mediated by 405 lncRNAs were thoroughly investigated. They exhibited dramatically diverse immune microenvironments and expression of HLA genes. The identification of two separate subtypes of enthesitis-related arthritis implies that our work may aid in the establishment of a more precise categorization system for JIA. m(6)A modification-related genes were obtained, and their underlying biological functions were explored. The m(6)Ascore system developed for individual JIA patients may be utilized to evaluate the immunological state or molecular pattern, thereby offering therapy recommendations. In short, through the investigation of the m(6)A regulators in JIA, the current work may contribute to our knowledge of the pathophysiology of JIA. Frontiers Media S.A. 2022-09-08 /pmc/articles/PMC9497457/ /pubmed/36160781 http://dx.doi.org/10.3389/fped.2022.930119 Text en Copyright © 2022 Zhang, Qin, Zhao, Wang and Tian. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Pediatrics
Zhang, Shibo
Qin, Jing
Zhao, Yuechao
Wang, Jian
Tian, Zhiliang
Identification of molecular patterns and diagnostic biomarkers in juvenile idiopathic arthritis based on the gene expression of m(6)A regulators
title Identification of molecular patterns and diagnostic biomarkers in juvenile idiopathic arthritis based on the gene expression of m(6)A regulators
title_full Identification of molecular patterns and diagnostic biomarkers in juvenile idiopathic arthritis based on the gene expression of m(6)A regulators
title_fullStr Identification of molecular patterns and diagnostic biomarkers in juvenile idiopathic arthritis based on the gene expression of m(6)A regulators
title_full_unstemmed Identification of molecular patterns and diagnostic biomarkers in juvenile idiopathic arthritis based on the gene expression of m(6)A regulators
title_short Identification of molecular patterns and diagnostic biomarkers in juvenile idiopathic arthritis based on the gene expression of m(6)A regulators
title_sort identification of molecular patterns and diagnostic biomarkers in juvenile idiopathic arthritis based on the gene expression of m(6)a regulators
topic Pediatrics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9497457/
https://www.ncbi.nlm.nih.gov/pubmed/36160781
http://dx.doi.org/10.3389/fped.2022.930119
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