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Image Embeddings Extracted from CNNs Outperform Other Transfer Learning Approaches in Classification of Chest Radiographs
To identify the best transfer learning approach for the identification of the most frequent abnormalities on chest radiographs (CXRs), we used embeddings extracted from pretrained convolutional neural networks (CNNs). An explainable AI (XAI) model was applied to interpret black-box model predictions...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9497580/ https://www.ncbi.nlm.nih.gov/pubmed/36140486 http://dx.doi.org/10.3390/diagnostics12092084 |
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author | Gozzi, Noemi Giacomello, Edoardo Sollini, Martina Kirienko, Margarita Ammirabile, Angela Lanzi, Pierluca Loiacono, Daniele Chiti, Arturo |
author_facet | Gozzi, Noemi Giacomello, Edoardo Sollini, Martina Kirienko, Margarita Ammirabile, Angela Lanzi, Pierluca Loiacono, Daniele Chiti, Arturo |
author_sort | Gozzi, Noemi |
collection | PubMed |
description | To identify the best transfer learning approach for the identification of the most frequent abnormalities on chest radiographs (CXRs), we used embeddings extracted from pretrained convolutional neural networks (CNNs). An explainable AI (XAI) model was applied to interpret black-box model predictions and assess its performance. Seven CNNs were trained on CheXpert. Three transfer learning approaches were thereafter applied to a local dataset. The classification results were ensembled using simple and entropy-weighted averaging. We applied Grad-CAM (an XAI model) to produce a saliency map. Grad-CAM maps were compared to manually extracted regions of interest, and the training time was recorded. The best transfer learning model was that which used image embeddings and random forest with simple averaging, with an average AUC of 0.856. Grad-CAM maps showed that the models focused on specific features of each CXR. CNNs pretrained on a large public dataset of medical images can be exploited as feature extractors for tasks of interest. The extracted image embeddings contain relevant information that can be used to train an additional classifier with satisfactory performance on an independent dataset, demonstrating it to be the optimal transfer learning strategy and overcoming the need for large private datasets, extensive computational resources, and long training times. |
format | Online Article Text |
id | pubmed-9497580 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-94975802022-09-23 Image Embeddings Extracted from CNNs Outperform Other Transfer Learning Approaches in Classification of Chest Radiographs Gozzi, Noemi Giacomello, Edoardo Sollini, Martina Kirienko, Margarita Ammirabile, Angela Lanzi, Pierluca Loiacono, Daniele Chiti, Arturo Diagnostics (Basel) Article To identify the best transfer learning approach for the identification of the most frequent abnormalities on chest radiographs (CXRs), we used embeddings extracted from pretrained convolutional neural networks (CNNs). An explainable AI (XAI) model was applied to interpret black-box model predictions and assess its performance. Seven CNNs were trained on CheXpert. Three transfer learning approaches were thereafter applied to a local dataset. The classification results were ensembled using simple and entropy-weighted averaging. We applied Grad-CAM (an XAI model) to produce a saliency map. Grad-CAM maps were compared to manually extracted regions of interest, and the training time was recorded. The best transfer learning model was that which used image embeddings and random forest with simple averaging, with an average AUC of 0.856. Grad-CAM maps showed that the models focused on specific features of each CXR. CNNs pretrained on a large public dataset of medical images can be exploited as feature extractors for tasks of interest. The extracted image embeddings contain relevant information that can be used to train an additional classifier with satisfactory performance on an independent dataset, demonstrating it to be the optimal transfer learning strategy and overcoming the need for large private datasets, extensive computational resources, and long training times. MDPI 2022-08-28 /pmc/articles/PMC9497580/ /pubmed/36140486 http://dx.doi.org/10.3390/diagnostics12092084 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Gozzi, Noemi Giacomello, Edoardo Sollini, Martina Kirienko, Margarita Ammirabile, Angela Lanzi, Pierluca Loiacono, Daniele Chiti, Arturo Image Embeddings Extracted from CNNs Outperform Other Transfer Learning Approaches in Classification of Chest Radiographs |
title | Image Embeddings Extracted from CNNs Outperform Other Transfer Learning Approaches in Classification of Chest Radiographs |
title_full | Image Embeddings Extracted from CNNs Outperform Other Transfer Learning Approaches in Classification of Chest Radiographs |
title_fullStr | Image Embeddings Extracted from CNNs Outperform Other Transfer Learning Approaches in Classification of Chest Radiographs |
title_full_unstemmed | Image Embeddings Extracted from CNNs Outperform Other Transfer Learning Approaches in Classification of Chest Radiographs |
title_short | Image Embeddings Extracted from CNNs Outperform Other Transfer Learning Approaches in Classification of Chest Radiographs |
title_sort | image embeddings extracted from cnns outperform other transfer learning approaches in classification of chest radiographs |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9497580/ https://www.ncbi.nlm.nih.gov/pubmed/36140486 http://dx.doi.org/10.3390/diagnostics12092084 |
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