Cargando…

Whole-Genome Profile of Greek Patients with Teratozοοspermia: Identification of Candidate Variants and Genes

Male infertility is a global health problem that affects a large number of couples worldwide. It can be categorized into specific subtypes, including teratozoospermia. The present study aimed to identify new variants associated with teratozoospermia in the Greek population and to explore the role of...

Descripción completa

Detalles Bibliográficos
Autores principales: Kyrgiafini, Maria-Anna, Giannoulis, Themistoklis, Chatziparasidou, Alexia, Christoforidis, Nikolaos, Mamuris, Zissis
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9498395/
https://www.ncbi.nlm.nih.gov/pubmed/36140773
http://dx.doi.org/10.3390/genes13091606
_version_ 1784794748162146304
author Kyrgiafini, Maria-Anna
Giannoulis, Themistoklis
Chatziparasidou, Alexia
Christoforidis, Nikolaos
Mamuris, Zissis
author_facet Kyrgiafini, Maria-Anna
Giannoulis, Themistoklis
Chatziparasidou, Alexia
Christoforidis, Nikolaos
Mamuris, Zissis
author_sort Kyrgiafini, Maria-Anna
collection PubMed
description Male infertility is a global health problem that affects a large number of couples worldwide. It can be categorized into specific subtypes, including teratozoospermia. The present study aimed to identify new variants associated with teratozoospermia in the Greek population and to explore the role of genes on which these were identified. For this reason, whole-genome sequencing (WGS) was performed on normozoospermic and teratozoospermic individuals, and after selecting only variants found in teratozoospermic men, these were further prioritized using a wide range of tools, functional and predictive algorithms, etc. An average of 600,000 variants were identified, and of them, 61 were characterized as high impact and 153 as moderate impact. Many of these are mapped in genes previously associated with male infertility, yet others are related for the first time to teratozoospermia. Furthermore, pathway enrichment analysis and Gene ontology (GO) analyses revealed the important role of the extracellular matrix in teratozoospermia. Therefore, the present study confirms the contribution of genes studied in the past to male infertility and sheds light on new molecular mechanisms by providing a list of variants and candidate genes associated with teratozoospermia in the Greek population.
format Online
Article
Text
id pubmed-9498395
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-94983952022-09-23 Whole-Genome Profile of Greek Patients with Teratozοοspermia: Identification of Candidate Variants and Genes Kyrgiafini, Maria-Anna Giannoulis, Themistoklis Chatziparasidou, Alexia Christoforidis, Nikolaos Mamuris, Zissis Genes (Basel) Article Male infertility is a global health problem that affects a large number of couples worldwide. It can be categorized into specific subtypes, including teratozoospermia. The present study aimed to identify new variants associated with teratozoospermia in the Greek population and to explore the role of genes on which these were identified. For this reason, whole-genome sequencing (WGS) was performed on normozoospermic and teratozoospermic individuals, and after selecting only variants found in teratozoospermic men, these were further prioritized using a wide range of tools, functional and predictive algorithms, etc. An average of 600,000 variants were identified, and of them, 61 were characterized as high impact and 153 as moderate impact. Many of these are mapped in genes previously associated with male infertility, yet others are related for the first time to teratozoospermia. Furthermore, pathway enrichment analysis and Gene ontology (GO) analyses revealed the important role of the extracellular matrix in teratozoospermia. Therefore, the present study confirms the contribution of genes studied in the past to male infertility and sheds light on new molecular mechanisms by providing a list of variants and candidate genes associated with teratozoospermia in the Greek population. MDPI 2022-09-08 /pmc/articles/PMC9498395/ /pubmed/36140773 http://dx.doi.org/10.3390/genes13091606 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kyrgiafini, Maria-Anna
Giannoulis, Themistoklis
Chatziparasidou, Alexia
Christoforidis, Nikolaos
Mamuris, Zissis
Whole-Genome Profile of Greek Patients with Teratozοοspermia: Identification of Candidate Variants and Genes
title Whole-Genome Profile of Greek Patients with Teratozοοspermia: Identification of Candidate Variants and Genes
title_full Whole-Genome Profile of Greek Patients with Teratozοοspermia: Identification of Candidate Variants and Genes
title_fullStr Whole-Genome Profile of Greek Patients with Teratozοοspermia: Identification of Candidate Variants and Genes
title_full_unstemmed Whole-Genome Profile of Greek Patients with Teratozοοspermia: Identification of Candidate Variants and Genes
title_short Whole-Genome Profile of Greek Patients with Teratozοοspermia: Identification of Candidate Variants and Genes
title_sort whole-genome profile of greek patients with teratozοοspermia: identification of candidate variants and genes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9498395/
https://www.ncbi.nlm.nih.gov/pubmed/36140773
http://dx.doi.org/10.3390/genes13091606
work_keys_str_mv AT kyrgiafinimariaanna wholegenomeprofileofgreekpatientswithteratozoospermiaidentificationofcandidatevariantsandgenes
AT giannoulisthemistoklis wholegenomeprofileofgreekpatientswithteratozoospermiaidentificationofcandidatevariantsandgenes
AT chatziparasidoualexia wholegenomeprofileofgreekpatientswithteratozoospermiaidentificationofcandidatevariantsandgenes
AT christoforidisnikolaos wholegenomeprofileofgreekpatientswithteratozoospermiaidentificationofcandidatevariantsandgenes
AT mamuriszissis wholegenomeprofileofgreekpatientswithteratozoospermiaidentificationofcandidatevariantsandgenes