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Transcriptome-Wide Identification of CCCH-Type Zinc Finger Proteins Family in Pinus massoniana and RR-TZF Proteins in Stress Response

CCCH-type zinc finger proteins play an important role in multiple biotic and abiotic stresses. More and more reports about CCCH functions in plant development and stress responses have appeared over the past few years, focusing especially on tandem CCCH zinc finger proteins (TZFs). However, this has...

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Autores principales: Wang, Dengbao, Yao, Sheng, Agassin, Romaric Hippolyte, Zhang, Mengyang, Lou, Xuan, Huang, Zichen, Zhang, Jinfeng, Ji, Kongshu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9498899/
https://www.ncbi.nlm.nih.gov/pubmed/36140811
http://dx.doi.org/10.3390/genes13091639
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author Wang, Dengbao
Yao, Sheng
Agassin, Romaric Hippolyte
Zhang, Mengyang
Lou, Xuan
Huang, Zichen
Zhang, Jinfeng
Ji, Kongshu
author_facet Wang, Dengbao
Yao, Sheng
Agassin, Romaric Hippolyte
Zhang, Mengyang
Lou, Xuan
Huang, Zichen
Zhang, Jinfeng
Ji, Kongshu
author_sort Wang, Dengbao
collection PubMed
description CCCH-type zinc finger proteins play an important role in multiple biotic and abiotic stresses. More and more reports about CCCH functions in plant development and stress responses have appeared over the past few years, focusing especially on tandem CCCH zinc finger proteins (TZFs). However, this has not been reported in Pinaceae. In this study, we identified 46 CCCH proteins, including 6 plant TZF members in Pinus massoniana, and performed bioinformatic analysis. According to RT-PCR analysis, we revealed the expression patterns of five RR-TZF genes under different abiotic stresses and hormone treatments. Meanwhile, tissue-specific expression analysis suggested that all genes were mainly expressed in needles. Additionally, RR-TZF genes showed transcriptional activation activity in yeast. The results in this study will be beneficial in improving the stress resistance of P. massoniana and facilitating further studies on the biological and molecular functions of CCCH zinc finger proteins.
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spelling pubmed-94988992022-09-23 Transcriptome-Wide Identification of CCCH-Type Zinc Finger Proteins Family in Pinus massoniana and RR-TZF Proteins in Stress Response Wang, Dengbao Yao, Sheng Agassin, Romaric Hippolyte Zhang, Mengyang Lou, Xuan Huang, Zichen Zhang, Jinfeng Ji, Kongshu Genes (Basel) Article CCCH-type zinc finger proteins play an important role in multiple biotic and abiotic stresses. More and more reports about CCCH functions in plant development and stress responses have appeared over the past few years, focusing especially on tandem CCCH zinc finger proteins (TZFs). However, this has not been reported in Pinaceae. In this study, we identified 46 CCCH proteins, including 6 plant TZF members in Pinus massoniana, and performed bioinformatic analysis. According to RT-PCR analysis, we revealed the expression patterns of five RR-TZF genes under different abiotic stresses and hormone treatments. Meanwhile, tissue-specific expression analysis suggested that all genes were mainly expressed in needles. Additionally, RR-TZF genes showed transcriptional activation activity in yeast. The results in this study will be beneficial in improving the stress resistance of P. massoniana and facilitating further studies on the biological and molecular functions of CCCH zinc finger proteins. MDPI 2022-09-13 /pmc/articles/PMC9498899/ /pubmed/36140811 http://dx.doi.org/10.3390/genes13091639 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Wang, Dengbao
Yao, Sheng
Agassin, Romaric Hippolyte
Zhang, Mengyang
Lou, Xuan
Huang, Zichen
Zhang, Jinfeng
Ji, Kongshu
Transcriptome-Wide Identification of CCCH-Type Zinc Finger Proteins Family in Pinus massoniana and RR-TZF Proteins in Stress Response
title Transcriptome-Wide Identification of CCCH-Type Zinc Finger Proteins Family in Pinus massoniana and RR-TZF Proteins in Stress Response
title_full Transcriptome-Wide Identification of CCCH-Type Zinc Finger Proteins Family in Pinus massoniana and RR-TZF Proteins in Stress Response
title_fullStr Transcriptome-Wide Identification of CCCH-Type Zinc Finger Proteins Family in Pinus massoniana and RR-TZF Proteins in Stress Response
title_full_unstemmed Transcriptome-Wide Identification of CCCH-Type Zinc Finger Proteins Family in Pinus massoniana and RR-TZF Proteins in Stress Response
title_short Transcriptome-Wide Identification of CCCH-Type Zinc Finger Proteins Family in Pinus massoniana and RR-TZF Proteins in Stress Response
title_sort transcriptome-wide identification of ccch-type zinc finger proteins family in pinus massoniana and rr-tzf proteins in stress response
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9498899/
https://www.ncbi.nlm.nih.gov/pubmed/36140811
http://dx.doi.org/10.3390/genes13091639
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