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Transcriptome-Wide Identification of CCCH-Type Zinc Finger Proteins Family in Pinus massoniana and RR-TZF Proteins in Stress Response
CCCH-type zinc finger proteins play an important role in multiple biotic and abiotic stresses. More and more reports about CCCH functions in plant development and stress responses have appeared over the past few years, focusing especially on tandem CCCH zinc finger proteins (TZFs). However, this has...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9498899/ https://www.ncbi.nlm.nih.gov/pubmed/36140811 http://dx.doi.org/10.3390/genes13091639 |
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author | Wang, Dengbao Yao, Sheng Agassin, Romaric Hippolyte Zhang, Mengyang Lou, Xuan Huang, Zichen Zhang, Jinfeng Ji, Kongshu |
author_facet | Wang, Dengbao Yao, Sheng Agassin, Romaric Hippolyte Zhang, Mengyang Lou, Xuan Huang, Zichen Zhang, Jinfeng Ji, Kongshu |
author_sort | Wang, Dengbao |
collection | PubMed |
description | CCCH-type zinc finger proteins play an important role in multiple biotic and abiotic stresses. More and more reports about CCCH functions in plant development and stress responses have appeared over the past few years, focusing especially on tandem CCCH zinc finger proteins (TZFs). However, this has not been reported in Pinaceae. In this study, we identified 46 CCCH proteins, including 6 plant TZF members in Pinus massoniana, and performed bioinformatic analysis. According to RT-PCR analysis, we revealed the expression patterns of five RR-TZF genes under different abiotic stresses and hormone treatments. Meanwhile, tissue-specific expression analysis suggested that all genes were mainly expressed in needles. Additionally, RR-TZF genes showed transcriptional activation activity in yeast. The results in this study will be beneficial in improving the stress resistance of P. massoniana and facilitating further studies on the biological and molecular functions of CCCH zinc finger proteins. |
format | Online Article Text |
id | pubmed-9498899 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-94988992022-09-23 Transcriptome-Wide Identification of CCCH-Type Zinc Finger Proteins Family in Pinus massoniana and RR-TZF Proteins in Stress Response Wang, Dengbao Yao, Sheng Agassin, Romaric Hippolyte Zhang, Mengyang Lou, Xuan Huang, Zichen Zhang, Jinfeng Ji, Kongshu Genes (Basel) Article CCCH-type zinc finger proteins play an important role in multiple biotic and abiotic stresses. More and more reports about CCCH functions in plant development and stress responses have appeared over the past few years, focusing especially on tandem CCCH zinc finger proteins (TZFs). However, this has not been reported in Pinaceae. In this study, we identified 46 CCCH proteins, including 6 plant TZF members in Pinus massoniana, and performed bioinformatic analysis. According to RT-PCR analysis, we revealed the expression patterns of five RR-TZF genes under different abiotic stresses and hormone treatments. Meanwhile, tissue-specific expression analysis suggested that all genes were mainly expressed in needles. Additionally, RR-TZF genes showed transcriptional activation activity in yeast. The results in this study will be beneficial in improving the stress resistance of P. massoniana and facilitating further studies on the biological and molecular functions of CCCH zinc finger proteins. MDPI 2022-09-13 /pmc/articles/PMC9498899/ /pubmed/36140811 http://dx.doi.org/10.3390/genes13091639 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Wang, Dengbao Yao, Sheng Agassin, Romaric Hippolyte Zhang, Mengyang Lou, Xuan Huang, Zichen Zhang, Jinfeng Ji, Kongshu Transcriptome-Wide Identification of CCCH-Type Zinc Finger Proteins Family in Pinus massoniana and RR-TZF Proteins in Stress Response |
title | Transcriptome-Wide Identification of CCCH-Type Zinc Finger Proteins Family in Pinus massoniana and RR-TZF Proteins in Stress Response |
title_full | Transcriptome-Wide Identification of CCCH-Type Zinc Finger Proteins Family in Pinus massoniana and RR-TZF Proteins in Stress Response |
title_fullStr | Transcriptome-Wide Identification of CCCH-Type Zinc Finger Proteins Family in Pinus massoniana and RR-TZF Proteins in Stress Response |
title_full_unstemmed | Transcriptome-Wide Identification of CCCH-Type Zinc Finger Proteins Family in Pinus massoniana and RR-TZF Proteins in Stress Response |
title_short | Transcriptome-Wide Identification of CCCH-Type Zinc Finger Proteins Family in Pinus massoniana and RR-TZF Proteins in Stress Response |
title_sort | transcriptome-wide identification of ccch-type zinc finger proteins family in pinus massoniana and rr-tzf proteins in stress response |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9498899/ https://www.ncbi.nlm.nih.gov/pubmed/36140811 http://dx.doi.org/10.3390/genes13091639 |
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