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Machine Learning for Evaluating the Cytotoxicity of Mixtures of Nano-TiO(2) and Heavy Metals: QSAR Model Apply Random Forest Algorithm after Clustering Analysis
With the development and application of nanomaterials, their impact on the environment and organisms has attracted attention. As a common nanomaterial, nano-titanium dioxide (nano-TiO(2)) has adsorption properties to heavy metals in the environment. Quantitative structure-activity relationship (QSAR...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9500633/ https://www.ncbi.nlm.nih.gov/pubmed/36144857 http://dx.doi.org/10.3390/molecules27186125 |
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author | Sang, Leqi Wang, Yunlin Zong, Cheng Wang, Pengfei Zhang, Huazhong Guo, Dan Yuan, Beilei Pan, Yong |
author_facet | Sang, Leqi Wang, Yunlin Zong, Cheng Wang, Pengfei Zhang, Huazhong Guo, Dan Yuan, Beilei Pan, Yong |
author_sort | Sang, Leqi |
collection | PubMed |
description | With the development and application of nanomaterials, their impact on the environment and organisms has attracted attention. As a common nanomaterial, nano-titanium dioxide (nano-TiO(2)) has adsorption properties to heavy metals in the environment. Quantitative structure-activity relationship (QSAR) is often used to predict the cytotoxicity of a single substance. However, there is little research on the toxicity of interaction between nanomaterials and other substances. In this study, we exposed human renal cortex proximal tubule epithelial (HK-2) cells to mixtures of eight heavy metals with nano-TiO(2), measured absorbance values by CCK-8, and calculated cell viability. PLS and two ensemble learning algorithms are used to build multiple QSAR models for data sets, and the test set R(2) is increased from 0.38 to 0.78 and 0.85, and RMSE is decreased from 0.18 to 0.12 and 0.10. After selecting the better random forest algorithm, the K-means clustering algorithm is used to continue to optimize the model, increasing the test set R(2) to 0.95 and decreasing the RMSE to 0.08 and 0.06. As a reliable machine algorithm, random forest can be used to predict the toxicity of the mixture of nano-metal oxides and heavy metals. The cluster analysis can effectively improve the stability and predictability of the model, and provide a new idea for the prediction of cytotoxicity model in the future. |
format | Online Article Text |
id | pubmed-9500633 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-95006332022-09-24 Machine Learning for Evaluating the Cytotoxicity of Mixtures of Nano-TiO(2) and Heavy Metals: QSAR Model Apply Random Forest Algorithm after Clustering Analysis Sang, Leqi Wang, Yunlin Zong, Cheng Wang, Pengfei Zhang, Huazhong Guo, Dan Yuan, Beilei Pan, Yong Molecules Article With the development and application of nanomaterials, their impact on the environment and organisms has attracted attention. As a common nanomaterial, nano-titanium dioxide (nano-TiO(2)) has adsorption properties to heavy metals in the environment. Quantitative structure-activity relationship (QSAR) is often used to predict the cytotoxicity of a single substance. However, there is little research on the toxicity of interaction between nanomaterials and other substances. In this study, we exposed human renal cortex proximal tubule epithelial (HK-2) cells to mixtures of eight heavy metals with nano-TiO(2), measured absorbance values by CCK-8, and calculated cell viability. PLS and two ensemble learning algorithms are used to build multiple QSAR models for data sets, and the test set R(2) is increased from 0.38 to 0.78 and 0.85, and RMSE is decreased from 0.18 to 0.12 and 0.10. After selecting the better random forest algorithm, the K-means clustering algorithm is used to continue to optimize the model, increasing the test set R(2) to 0.95 and decreasing the RMSE to 0.08 and 0.06. As a reliable machine algorithm, random forest can be used to predict the toxicity of the mixture of nano-metal oxides and heavy metals. The cluster analysis can effectively improve the stability and predictability of the model, and provide a new idea for the prediction of cytotoxicity model in the future. MDPI 2022-09-19 /pmc/articles/PMC9500633/ /pubmed/36144857 http://dx.doi.org/10.3390/molecules27186125 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Sang, Leqi Wang, Yunlin Zong, Cheng Wang, Pengfei Zhang, Huazhong Guo, Dan Yuan, Beilei Pan, Yong Machine Learning for Evaluating the Cytotoxicity of Mixtures of Nano-TiO(2) and Heavy Metals: QSAR Model Apply Random Forest Algorithm after Clustering Analysis |
title | Machine Learning for Evaluating the Cytotoxicity of Mixtures of Nano-TiO(2) and Heavy Metals: QSAR Model Apply Random Forest Algorithm after Clustering Analysis |
title_full | Machine Learning for Evaluating the Cytotoxicity of Mixtures of Nano-TiO(2) and Heavy Metals: QSAR Model Apply Random Forest Algorithm after Clustering Analysis |
title_fullStr | Machine Learning for Evaluating the Cytotoxicity of Mixtures of Nano-TiO(2) and Heavy Metals: QSAR Model Apply Random Forest Algorithm after Clustering Analysis |
title_full_unstemmed | Machine Learning for Evaluating the Cytotoxicity of Mixtures of Nano-TiO(2) and Heavy Metals: QSAR Model Apply Random Forest Algorithm after Clustering Analysis |
title_short | Machine Learning for Evaluating the Cytotoxicity of Mixtures of Nano-TiO(2) and Heavy Metals: QSAR Model Apply Random Forest Algorithm after Clustering Analysis |
title_sort | machine learning for evaluating the cytotoxicity of mixtures of nano-tio(2) and heavy metals: qsar model apply random forest algorithm after clustering analysis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9500633/ https://www.ncbi.nlm.nih.gov/pubmed/36144857 http://dx.doi.org/10.3390/molecules27186125 |
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