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Image Analysis in Digital Pathology Utilizing Machine Learning and Deep Neural Networks †
Detection of regions of interest (ROIs) in whole slide images (WSIs) in a clinical setting is a highly subjective and a labor-intensive task. In this work, recent developments in machine learning and computer vision algorithms are presented to assess their possible usage and performance to enhance a...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9500673/ https://www.ncbi.nlm.nih.gov/pubmed/36143229 http://dx.doi.org/10.3390/jpm12091444 |
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author | Amerikanos, Paris Maglogiannis, Ilias |
author_facet | Amerikanos, Paris Maglogiannis, Ilias |
author_sort | Amerikanos, Paris |
collection | PubMed |
description | Detection of regions of interest (ROIs) in whole slide images (WSIs) in a clinical setting is a highly subjective and a labor-intensive task. In this work, recent developments in machine learning and computer vision algorithms are presented to assess their possible usage and performance to enhance and accelerate clinical pathology procedures, such as ROI detection in WSIs. In this context, a state-of-the-art deep learning framework (Detectron2) was trained on two cases linked to the TUPAC16 dataset for object detection and on the JPATHOL dataset for instance segmentation. The predictions were evaluated against competing models and further possible improvements are discussed. |
format | Online Article Text |
id | pubmed-9500673 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-95006732022-09-24 Image Analysis in Digital Pathology Utilizing Machine Learning and Deep Neural Networks † Amerikanos, Paris Maglogiannis, Ilias J Pers Med Article Detection of regions of interest (ROIs) in whole slide images (WSIs) in a clinical setting is a highly subjective and a labor-intensive task. In this work, recent developments in machine learning and computer vision algorithms are presented to assess their possible usage and performance to enhance and accelerate clinical pathology procedures, such as ROI detection in WSIs. In this context, a state-of-the-art deep learning framework (Detectron2) was trained on two cases linked to the TUPAC16 dataset for object detection and on the JPATHOL dataset for instance segmentation. The predictions were evaluated against competing models and further possible improvements are discussed. MDPI 2022-09-01 /pmc/articles/PMC9500673/ /pubmed/36143229 http://dx.doi.org/10.3390/jpm12091444 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Amerikanos, Paris Maglogiannis, Ilias Image Analysis in Digital Pathology Utilizing Machine Learning and Deep Neural Networks † |
title | Image Analysis in Digital Pathology Utilizing Machine Learning and Deep Neural Networks † |
title_full | Image Analysis in Digital Pathology Utilizing Machine Learning and Deep Neural Networks † |
title_fullStr | Image Analysis in Digital Pathology Utilizing Machine Learning and Deep Neural Networks † |
title_full_unstemmed | Image Analysis in Digital Pathology Utilizing Machine Learning and Deep Neural Networks † |
title_short | Image Analysis in Digital Pathology Utilizing Machine Learning and Deep Neural Networks † |
title_sort | image analysis in digital pathology utilizing machine learning and deep neural networks † |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9500673/ https://www.ncbi.nlm.nih.gov/pubmed/36143229 http://dx.doi.org/10.3390/jpm12091444 |
work_keys_str_mv | AT amerikanosparis imageanalysisindigitalpathologyutilizingmachinelearninganddeepneuralnetworks AT maglogiannisilias imageanalysisindigitalpathologyutilizingmachinelearninganddeepneuralnetworks |