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Image Analysis in Digital Pathology Utilizing Machine Learning and Deep Neural Networks †

Detection of regions of interest (ROIs) in whole slide images (WSIs) in a clinical setting is a highly subjective and a labor-intensive task. In this work, recent developments in machine learning and computer vision algorithms are presented to assess their possible usage and performance to enhance a...

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Autores principales: Amerikanos, Paris, Maglogiannis, Ilias
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9500673/
https://www.ncbi.nlm.nih.gov/pubmed/36143229
http://dx.doi.org/10.3390/jpm12091444
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author Amerikanos, Paris
Maglogiannis, Ilias
author_facet Amerikanos, Paris
Maglogiannis, Ilias
author_sort Amerikanos, Paris
collection PubMed
description Detection of regions of interest (ROIs) in whole slide images (WSIs) in a clinical setting is a highly subjective and a labor-intensive task. In this work, recent developments in machine learning and computer vision algorithms are presented to assess their possible usage and performance to enhance and accelerate clinical pathology procedures, such as ROI detection in WSIs. In this context, a state-of-the-art deep learning framework (Detectron2) was trained on two cases linked to the TUPAC16 dataset for object detection and on the JPATHOL dataset for instance segmentation. The predictions were evaluated against competing models and further possible improvements are discussed.
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spelling pubmed-95006732022-09-24 Image Analysis in Digital Pathology Utilizing Machine Learning and Deep Neural Networks † Amerikanos, Paris Maglogiannis, Ilias J Pers Med Article Detection of regions of interest (ROIs) in whole slide images (WSIs) in a clinical setting is a highly subjective and a labor-intensive task. In this work, recent developments in machine learning and computer vision algorithms are presented to assess their possible usage and performance to enhance and accelerate clinical pathology procedures, such as ROI detection in WSIs. In this context, a state-of-the-art deep learning framework (Detectron2) was trained on two cases linked to the TUPAC16 dataset for object detection and on the JPATHOL dataset for instance segmentation. The predictions were evaluated against competing models and further possible improvements are discussed. MDPI 2022-09-01 /pmc/articles/PMC9500673/ /pubmed/36143229 http://dx.doi.org/10.3390/jpm12091444 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Amerikanos, Paris
Maglogiannis, Ilias
Image Analysis in Digital Pathology Utilizing Machine Learning and Deep Neural Networks †
title Image Analysis in Digital Pathology Utilizing Machine Learning and Deep Neural Networks †
title_full Image Analysis in Digital Pathology Utilizing Machine Learning and Deep Neural Networks †
title_fullStr Image Analysis in Digital Pathology Utilizing Machine Learning and Deep Neural Networks †
title_full_unstemmed Image Analysis in Digital Pathology Utilizing Machine Learning and Deep Neural Networks †
title_short Image Analysis in Digital Pathology Utilizing Machine Learning and Deep Neural Networks †
title_sort image analysis in digital pathology utilizing machine learning and deep neural networks †
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9500673/
https://www.ncbi.nlm.nih.gov/pubmed/36143229
http://dx.doi.org/10.3390/jpm12091444
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