Cargando…

A Novel Approach of SWATH-Based Metabolomics Analysis Using the Human Metabolome Database Spectral Library

Metabolomics is a potential approach to paving new avenues for clinical diagnosis, molecular medicine, and therapeutic drug monitoring and development. The conventional metabolomics analysis pipeline depends on the data-independent acquisition (DIA) technique. Although powerful, it still suffers fro...

Descripción completa

Detalles Bibliográficos
Autores principales:	Shikshaky, Hassan, Ahmed, Eman Abdelnaby, Anwar, Ali Mostafa, Osama, Aya, Ezzeldin, Shahd, Nasr, Antony, Mahgoub, Sebaey, Magdeldin, Sameh
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2022
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9500730/ https://www.ncbi.nlm.nih.gov/pubmed/36142821 http://dx.doi.org/10.3390/ijms231810908

Ejemplares similares

gtAI: an improved species-specific tRNA adaptation index using the genetic algorithm
por: Anwar, Ali Mostafa, et al.
Publicado: (2023)

Integrated multiomics analysis to infer COVID-19 biological insights
por: Sameh, Mahmoud, et al.
Publicado: (2023)

Metabolomics and Lipidomics Screening Reveal Reprogrammed Signaling Pathways toward Cancer Development in Non-Alcoholic Steatohepatitis
por: Ahmed, Eman A., et al.
Publicado: (2022)

Generation of a zebrafish SWATH-MS spectral library to quantify 10,000 proteins
por: Blattmann, Peter, et al.
Publicado: (2019)

The Generation of a Comprehensive Spectral Library for the Analysis of the Guinea Pig Proteome by SWATH‐MS
por: Palmowski, Pawel, et al.
Publicado: (2019)

A comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS
por: Midha, Mukul K., et al.
Publicado: (2020)

Proteomics and metabolomics analyses of Streptococcus agalactiae isolates from human and animal sources
por: Enany, Shymaa, et al.
Publicado: (2023)

A comprehensive CHO SWATH-MS spectral library for robust quantitative profiling of 10,000 proteins
por: Sim, Kae Hwan, et al.
Publicado: (2020)

Generation of a murine SWATH-MS spectral library to quantify more than 11,000 proteins
por: Zhong, Chuan-Qi, et al.
Publicado: (2020)

Generation of a mouse SWATH-MS spectral library to quantify 10148 proteins involved in cell reprogramming
por: Ulanga, Uxue, et al.
Publicado: (2021)

Creation of a Plant Metabolite Spectral Library for Untargeted and Targeted Metabolomics
por: Li, Yangyang, et al.
Publicado: (2023)

Thermotolerance and plasticity of camel somatic cells exposed to acute and chronic heat stress
por: Saadeldin, Islam M., et al.
Publicado: (2019)

A comprehensive spectral assay library to quantify the Halobacterium salinarum NRC-1 proteome by DIA/SWATH-MS
por: Kusebauch, Ulrike, et al.
Publicado: (2023)

Comparison of fractionation proteomics for local SWATH library building
por: Govaert, Elisabeth, et al.
Publicado: (2017)

SWATH(HM)-Based Metabolomics of Follicular Fluid in Patients Shows That Progesterone Adversely Affects Oocyte Quality
por: Sun, Zhengao, et al.
Publicado: (2018)

Cancer Metabolomics and the Human Metabolome Database
por: Wishart, David S., et al.
Publicado: (2016)

mSpecs: a software tool for the administration and editing of mass spectral libraries in the field of metabolomics
por: Thielen, Bernhard, et al.
Publicado: (2009)

A mouse SWATH-mass spectrometry reference spectral library enables deconvolution of species-specific proteomic alterations in human tumour xenografts
por: Krasny, Lukas, et al.
Publicado: (2020)

Assessing the Potential of Untargeted SWATH Mass Spectrometry-Based Metabolomics to Differentiate Closely Related Exposures in Observational Studies
por: Klont, Frank, et al.
Publicado: (2022)

Aspergillus Metabolome Database for Mass Spectrometry Metabolomics
por: Gil-de-la-Fuente, Alberto, et al.
Publicado: (2021)

Creating a Reliable Mass Spectral–Retention Time Library for All Ion Fragmentation-Based Metabolomics
por: Tada, Ipputa, et al.
Publicado: (2019)

Wide Swath and High Resolution Airborne HyperSpectral Imaging System and Flight Validation
por: Zhang, Dong, et al.
Publicado: (2019)

A new SWATH ion library for mouse adult hippocampal neural stem cells
por: Braccia, Clarissa, et al.
Publicado: (2018)

HMDB: the Human Metabolome Database
por: Wishart, David S., et al.
Publicado: (2007)

YMDB: the Yeast Metabolome Database
por: Jewison, Timothy, et al.
Publicado: (2012)

Accurate, Fully-Automated NMR Spectral Profiling for Metabolomics
por: Ravanbakhsh, Siamak, et al.
Publicado: (2015)

Anti-inflammatory potential of Penicillium brefeldianum endophytic fungus supported with phytochemical profiling
por: Saleh, Asmaa, et al.
Publicado: (2023)

Combining CRISPRi and metabolomics for functional annotation of compound libraries
por: Anglada-Girotto, Miquel, et al.
Publicado: (2022)

A Prostate Cancer Proteomics Database for SWATH-MS Based Protein Quantification
por: Muazzam, Ammara, et al.
Publicado: (2021)

ECMDB: The E. coli Metabolome Database
por: Guo, An Chi, et al.
Publicado: (2013)

MMHub, a database for the mulberry metabolome
por: Li, Dong, et al.
Publicado: (2020)

LCMD: Lung Cancer Metabolome Database
por: Wu, Wei-Sheng, et al.
Publicado: (2021)

Correction: Accurate, Fully-Automated NMR Spectral Profiling for Metabolomics
por: Ravanbakhsh, Siamak, et al.
Publicado: (2015)

Significance estimation for large scale metabolomics annotations by spectral matching
por: Scheubert, Kerstin, et al.
Publicado: (2017)

Benchmarking Non-Targeted Metabolomics Using Yeast-Derived Libraries
por: Rampler, Evelyn, et al.
Publicado: (2021)

MMMDB: Mouse Multiple Tissue Metabolome Database
por: Sugimoto, Masahiro, et al.
Publicado: (2012)

Development of RIKEN Plant Metabolome MetaDatabase
por: Fukushima, Atsushi, et al.
Publicado: (2021)

Survey for Computer-Aided Tools and Databases in Metabolomics
por: Banimfreg, Bayan Hassan, et al.
Publicado: (2022)

Mass Spectral Molecular Networking to Profile the Metabolome of Biostimulant Bacillus Strains
por: Nephali, Lerato, et al.
Publicado: (2022)

parazitCUB: An R package to streamline the process of investigating the adaptations of parasites' codon usage bias
por: Anwar, Ali Mostafa, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_tdsjf9n1j948s4psu4nbjb1c3l