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Genome-Wide Identification of SMXL Gene Family in Soybean and Expression Analysis of GmSMXLs under Shade Stress
SMXL6,7,8 are important target proteins in strigolactone (SL) signal pathway, which negatively regulate the reception and response of SL signal, and play an important role in regulating plant branching. However, there is a relative lack of research on soybean SMXL gene family. In this study, 31 soyb...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9500757/ https://www.ncbi.nlm.nih.gov/pubmed/36145811 http://dx.doi.org/10.3390/plants11182410 |
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author | Zhang, Han Wang, Li Gao, Yang Guo, Yukai Zheng, Naiwen Xu, Xiangyao Xu, Mei Wang, Wenyan Liu, Chunyan Liu, Weiguo Yang, Wenyu |
author_facet | Zhang, Han Wang, Li Gao, Yang Guo, Yukai Zheng, Naiwen Xu, Xiangyao Xu, Mei Wang, Wenyan Liu, Chunyan Liu, Weiguo Yang, Wenyu |
author_sort | Zhang, Han |
collection | PubMed |
description | SMXL6,7,8 are important target proteins in strigolactone (SL) signal pathway, which negatively regulate the reception and response of SL signal, and play an important role in regulating plant branching. However, there is a relative lack of research on soybean SMXL gene family. In this study, 31 soybean SMXL genes were identified by phylogenetic analysis and divided into three groups. Based on the analysis of GmSMXL gene’s structure and motif composition, it was found that the GmSMXL members in the same group were similar. The results of cis-element analysis showed that GmSMXL genes may regulate the growth and development of soybean by responding to hormones and environment. Based on the tissue specificity analysis and GR24 treatment, the results showed that four GmSMXLs in G1 group were predominantly expressed in stems, axillary buds and leaves and involved in SL signal pathway. Finally, under shading stress, the expression of four genes in G1 group was slightly different in different varieties, which may be the reason for the difference in branching ability of different varieties under shading stress. We have systematically studied the SMXL gene family in soybean, which may lay a foundation for the study of the function of GmSMXL gene in the future. |
format | Online Article Text |
id | pubmed-9500757 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-95007572022-09-24 Genome-Wide Identification of SMXL Gene Family in Soybean and Expression Analysis of GmSMXLs under Shade Stress Zhang, Han Wang, Li Gao, Yang Guo, Yukai Zheng, Naiwen Xu, Xiangyao Xu, Mei Wang, Wenyan Liu, Chunyan Liu, Weiguo Yang, Wenyu Plants (Basel) Article SMXL6,7,8 are important target proteins in strigolactone (SL) signal pathway, which negatively regulate the reception and response of SL signal, and play an important role in regulating plant branching. However, there is a relative lack of research on soybean SMXL gene family. In this study, 31 soybean SMXL genes were identified by phylogenetic analysis and divided into three groups. Based on the analysis of GmSMXL gene’s structure and motif composition, it was found that the GmSMXL members in the same group were similar. The results of cis-element analysis showed that GmSMXL genes may regulate the growth and development of soybean by responding to hormones and environment. Based on the tissue specificity analysis and GR24 treatment, the results showed that four GmSMXLs in G1 group were predominantly expressed in stems, axillary buds and leaves and involved in SL signal pathway. Finally, under shading stress, the expression of four genes in G1 group was slightly different in different varieties, which may be the reason for the difference in branching ability of different varieties under shading stress. We have systematically studied the SMXL gene family in soybean, which may lay a foundation for the study of the function of GmSMXL gene in the future. MDPI 2022-09-15 /pmc/articles/PMC9500757/ /pubmed/36145811 http://dx.doi.org/10.3390/plants11182410 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Zhang, Han Wang, Li Gao, Yang Guo, Yukai Zheng, Naiwen Xu, Xiangyao Xu, Mei Wang, Wenyan Liu, Chunyan Liu, Weiguo Yang, Wenyu Genome-Wide Identification of SMXL Gene Family in Soybean and Expression Analysis of GmSMXLs under Shade Stress |
title | Genome-Wide Identification of SMXL Gene Family in Soybean and Expression Analysis of GmSMXLs under Shade Stress |
title_full | Genome-Wide Identification of SMXL Gene Family in Soybean and Expression Analysis of GmSMXLs under Shade Stress |
title_fullStr | Genome-Wide Identification of SMXL Gene Family in Soybean and Expression Analysis of GmSMXLs under Shade Stress |
title_full_unstemmed | Genome-Wide Identification of SMXL Gene Family in Soybean and Expression Analysis of GmSMXLs under Shade Stress |
title_short | Genome-Wide Identification of SMXL Gene Family in Soybean and Expression Analysis of GmSMXLs under Shade Stress |
title_sort | genome-wide identification of smxl gene family in soybean and expression analysis of gmsmxls under shade stress |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9500757/ https://www.ncbi.nlm.nih.gov/pubmed/36145811 http://dx.doi.org/10.3390/plants11182410 |
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