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Bioinformatic Analysis for Mucoepidermoid and Adenoid Cystic Carcinoma of Therapeutic Targets

Salivary gland neoplasms are a heterogeneous neoplasm group, including mucoepidermoid carcinoma (MECa), adenoid cystic carcinoma (AdCC), and many others. Objective: We aimed to identify new critical genes of MECa and AdCC using bioinformatics analysis. Methods: Gene expression profile of GSE153283 w...

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Autores principales: Ramírez-Martínez, Carla Monserrat, Jacinto-Alemán, Luis Fernando, Cruz-Hervert, Luis Pablo, Portilla-Robertson, Javier, Leyva-Huerta, Elba Rosa
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9500958/
https://www.ncbi.nlm.nih.gov/pubmed/36146635
http://dx.doi.org/10.3390/vaccines10091557
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author Ramírez-Martínez, Carla Monserrat
Jacinto-Alemán, Luis Fernando
Cruz-Hervert, Luis Pablo
Portilla-Robertson, Javier
Leyva-Huerta, Elba Rosa
author_facet Ramírez-Martínez, Carla Monserrat
Jacinto-Alemán, Luis Fernando
Cruz-Hervert, Luis Pablo
Portilla-Robertson, Javier
Leyva-Huerta, Elba Rosa
author_sort Ramírez-Martínez, Carla Monserrat
collection PubMed
description Salivary gland neoplasms are a heterogeneous neoplasm group, including mucoepidermoid carcinoma (MECa), adenoid cystic carcinoma (AdCC), and many others. Objective: We aimed to identify new critical genes of MECa and AdCC using bioinformatics analysis. Methods: Gene expression profile of GSE153283 was analyzed by the GEO2R online tool to use the DAVID software for their subsequent enrichment. Protein–protein interactions (PPI) were visualized using String. Cytoscape with MCODE plugin followed by Kaplan–Meier online for overall survival analysis were performed. Results: 97 upregulated genes were identified for MECa and 86 for AdCC. PPI analysis revealed 22 genes for MECa and 63 for AdCC that were validated by Kaplan–Meier that showed FN1 and SPP1 for MECa, and EGF and ERBB2 for AdCC as more significant candidate genes for each neoplasm. Conclusion: With bioinformatics methods, we identify upregulated genes in MECa and AdCC. The resulting candidate genes as possible therapeutic targets were FN1, SPP1, EGF, and ERBB2, and all those genes had been tested as a target in other neoplasm kinds but not salivary gland neoplasm. The bioinformatic evidence is a solid strategy to select them for more extensive research with clinical impact.
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spelling pubmed-95009582022-09-24 Bioinformatic Analysis for Mucoepidermoid and Adenoid Cystic Carcinoma of Therapeutic Targets Ramírez-Martínez, Carla Monserrat Jacinto-Alemán, Luis Fernando Cruz-Hervert, Luis Pablo Portilla-Robertson, Javier Leyva-Huerta, Elba Rosa Vaccines (Basel) Article Salivary gland neoplasms are a heterogeneous neoplasm group, including mucoepidermoid carcinoma (MECa), adenoid cystic carcinoma (AdCC), and many others. Objective: We aimed to identify new critical genes of MECa and AdCC using bioinformatics analysis. Methods: Gene expression profile of GSE153283 was analyzed by the GEO2R online tool to use the DAVID software for their subsequent enrichment. Protein–protein interactions (PPI) were visualized using String. Cytoscape with MCODE plugin followed by Kaplan–Meier online for overall survival analysis were performed. Results: 97 upregulated genes were identified for MECa and 86 for AdCC. PPI analysis revealed 22 genes for MECa and 63 for AdCC that were validated by Kaplan–Meier that showed FN1 and SPP1 for MECa, and EGF and ERBB2 for AdCC as more significant candidate genes for each neoplasm. Conclusion: With bioinformatics methods, we identify upregulated genes in MECa and AdCC. The resulting candidate genes as possible therapeutic targets were FN1, SPP1, EGF, and ERBB2, and all those genes had been tested as a target in other neoplasm kinds but not salivary gland neoplasm. The bioinformatic evidence is a solid strategy to select them for more extensive research with clinical impact. MDPI 2022-09-19 /pmc/articles/PMC9500958/ /pubmed/36146635 http://dx.doi.org/10.3390/vaccines10091557 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ramírez-Martínez, Carla Monserrat
Jacinto-Alemán, Luis Fernando
Cruz-Hervert, Luis Pablo
Portilla-Robertson, Javier
Leyva-Huerta, Elba Rosa
Bioinformatic Analysis for Mucoepidermoid and Adenoid Cystic Carcinoma of Therapeutic Targets
title Bioinformatic Analysis for Mucoepidermoid and Adenoid Cystic Carcinoma of Therapeutic Targets
title_full Bioinformatic Analysis for Mucoepidermoid and Adenoid Cystic Carcinoma of Therapeutic Targets
title_fullStr Bioinformatic Analysis for Mucoepidermoid and Adenoid Cystic Carcinoma of Therapeutic Targets
title_full_unstemmed Bioinformatic Analysis for Mucoepidermoid and Adenoid Cystic Carcinoma of Therapeutic Targets
title_short Bioinformatic Analysis for Mucoepidermoid and Adenoid Cystic Carcinoma of Therapeutic Targets
title_sort bioinformatic analysis for mucoepidermoid and adenoid cystic carcinoma of therapeutic targets
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9500958/
https://www.ncbi.nlm.nih.gov/pubmed/36146635
http://dx.doi.org/10.3390/vaccines10091557
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