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Diversity of Ascomycota in Jilin: Introducing Novel Woody Litter Taxa in Cucurbitariaceae

Cucurbitariaceae has a high biodiversity worldwide on various hosts and is distributed in tropical and temperate regions. Woody litters collected in Changchun, Jilin Province, China, revealed a distinct collection of fungi in the family Cucurbitariaceae based on morphological and molecular data. Phy...

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Autores principales: Su, Wenxin, Xu, Rong, Bhunjun, Chitrabhanu S., Tian, Shangqing, Dai, Yueting, Li, Yu, Phukhamsakda, Chayanard
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9501381/
https://www.ncbi.nlm.nih.gov/pubmed/36135630
http://dx.doi.org/10.3390/jof8090905
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author Su, Wenxin
Xu, Rong
Bhunjun, Chitrabhanu S.
Tian, Shangqing
Dai, Yueting
Li, Yu
Phukhamsakda, Chayanard
author_facet Su, Wenxin
Xu, Rong
Bhunjun, Chitrabhanu S.
Tian, Shangqing
Dai, Yueting
Li, Yu
Phukhamsakda, Chayanard
author_sort Su, Wenxin
collection PubMed
description Cucurbitariaceae has a high biodiversity worldwide on various hosts and is distributed in tropical and temperate regions. Woody litters collected in Changchun, Jilin Province, China, revealed a distinct collection of fungi in the family Cucurbitariaceae based on morphological and molecular data. Phylogenetic analyses of the concatenated matrix of the internal transcribed spacer (ITS) region, the large subunit (LSU) of ribosomal DNA, the RNA polymerase II subunit (rpb2), the translation elongation factor 1-alpha (tef1-α) and β-tubulin (β-tub) genes indicated that the isolates represent Allocucurbitaria and Parafenestella species based on maximum likelihood (ML), maximum parsimony (MP) and Bayesian analysis (BPP). We report four novel species: Allocucurbitaria mori, Parafenestella changchunensis, P. ulmi and P. ulmicola. The importance of five DNA markers for species-level identification in Cucurbitariaceae was determined by Assemble Species by Automatic Partitioning (ASAP) analyses. The protein-coding gene β-tub is determined to be the best marker for species level identification in Cucurbitariaceae.
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spelling pubmed-95013812022-09-24 Diversity of Ascomycota in Jilin: Introducing Novel Woody Litter Taxa in Cucurbitariaceae Su, Wenxin Xu, Rong Bhunjun, Chitrabhanu S. Tian, Shangqing Dai, Yueting Li, Yu Phukhamsakda, Chayanard J Fungi (Basel) Article Cucurbitariaceae has a high biodiversity worldwide on various hosts and is distributed in tropical and temperate regions. Woody litters collected in Changchun, Jilin Province, China, revealed a distinct collection of fungi in the family Cucurbitariaceae based on morphological and molecular data. Phylogenetic analyses of the concatenated matrix of the internal transcribed spacer (ITS) region, the large subunit (LSU) of ribosomal DNA, the RNA polymerase II subunit (rpb2), the translation elongation factor 1-alpha (tef1-α) and β-tubulin (β-tub) genes indicated that the isolates represent Allocucurbitaria and Parafenestella species based on maximum likelihood (ML), maximum parsimony (MP) and Bayesian analysis (BPP). We report four novel species: Allocucurbitaria mori, Parafenestella changchunensis, P. ulmi and P. ulmicola. The importance of five DNA markers for species-level identification in Cucurbitariaceae was determined by Assemble Species by Automatic Partitioning (ASAP) analyses. The protein-coding gene β-tub is determined to be the best marker for species level identification in Cucurbitariaceae. MDPI 2022-08-26 /pmc/articles/PMC9501381/ /pubmed/36135630 http://dx.doi.org/10.3390/jof8090905 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Su, Wenxin
Xu, Rong
Bhunjun, Chitrabhanu S.
Tian, Shangqing
Dai, Yueting
Li, Yu
Phukhamsakda, Chayanard
Diversity of Ascomycota in Jilin: Introducing Novel Woody Litter Taxa in Cucurbitariaceae
title Diversity of Ascomycota in Jilin: Introducing Novel Woody Litter Taxa in Cucurbitariaceae
title_full Diversity of Ascomycota in Jilin: Introducing Novel Woody Litter Taxa in Cucurbitariaceae
title_fullStr Diversity of Ascomycota in Jilin: Introducing Novel Woody Litter Taxa in Cucurbitariaceae
title_full_unstemmed Diversity of Ascomycota in Jilin: Introducing Novel Woody Litter Taxa in Cucurbitariaceae
title_short Diversity of Ascomycota in Jilin: Introducing Novel Woody Litter Taxa in Cucurbitariaceae
title_sort diversity of ascomycota in jilin: introducing novel woody litter taxa in cucurbitariaceae
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9501381/
https://www.ncbi.nlm.nih.gov/pubmed/36135630
http://dx.doi.org/10.3390/jof8090905
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