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Interdomain Dynamics via Paramagnetic NMR on the Highly Flexible Complex Calmodulin/Munc13-1

[Image: see text] Paramagnetic NMR constraints are very useful to study protein interdomain motion, but their interpretation is not always straightforward. On the example of the particularly flexible complex Calmodulin/Munc13-1, we present a new approach to characterize this motion with pseudocontac...

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Autores principales: Karschin, Niels, Becker, Stefan, Griesinger, Christian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9501808/
https://www.ncbi.nlm.nih.gov/pubmed/36082939
http://dx.doi.org/10.1021/jacs.2c06611
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author Karschin, Niels
Becker, Stefan
Griesinger, Christian
author_facet Karschin, Niels
Becker, Stefan
Griesinger, Christian
author_sort Karschin, Niels
collection PubMed
description [Image: see text] Paramagnetic NMR constraints are very useful to study protein interdomain motion, but their interpretation is not always straightforward. On the example of the particularly flexible complex Calmodulin/Munc13-1, we present a new approach to characterize this motion with pseudocontact shifts and residual dipolar couplings. Using molecular mechanics, we sampled the conformational space of the complex and used a genetic algorithm to find ensembles that are in agreement with the data. We used the Bayesian information criterion to determine the ideal ensemble size. This way, we were able to make an accurate, unambiguous, reproducible model of the interdomain motion of Calmodulin/Munc13-1 without prior knowledge about the domain orientation from crystallography.
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spelling pubmed-95018082022-09-24 Interdomain Dynamics via Paramagnetic NMR on the Highly Flexible Complex Calmodulin/Munc13-1 Karschin, Niels Becker, Stefan Griesinger, Christian J Am Chem Soc [Image: see text] Paramagnetic NMR constraints are very useful to study protein interdomain motion, but their interpretation is not always straightforward. On the example of the particularly flexible complex Calmodulin/Munc13-1, we present a new approach to characterize this motion with pseudocontact shifts and residual dipolar couplings. Using molecular mechanics, we sampled the conformational space of the complex and used a genetic algorithm to find ensembles that are in agreement with the data. We used the Bayesian information criterion to determine the ideal ensemble size. This way, we were able to make an accurate, unambiguous, reproducible model of the interdomain motion of Calmodulin/Munc13-1 without prior knowledge about the domain orientation from crystallography. American Chemical Society 2022-09-09 2022-09-21 /pmc/articles/PMC9501808/ /pubmed/36082939 http://dx.doi.org/10.1021/jacs.2c06611 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Karschin, Niels
Becker, Stefan
Griesinger, Christian
Interdomain Dynamics via Paramagnetic NMR on the Highly Flexible Complex Calmodulin/Munc13-1
title Interdomain Dynamics via Paramagnetic NMR on the Highly Flexible Complex Calmodulin/Munc13-1
title_full Interdomain Dynamics via Paramagnetic NMR on the Highly Flexible Complex Calmodulin/Munc13-1
title_fullStr Interdomain Dynamics via Paramagnetic NMR on the Highly Flexible Complex Calmodulin/Munc13-1
title_full_unstemmed Interdomain Dynamics via Paramagnetic NMR on the Highly Flexible Complex Calmodulin/Munc13-1
title_short Interdomain Dynamics via Paramagnetic NMR on the Highly Flexible Complex Calmodulin/Munc13-1
title_sort interdomain dynamics via paramagnetic nmr on the highly flexible complex calmodulin/munc13-1
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9501808/
https://www.ncbi.nlm.nih.gov/pubmed/36082939
http://dx.doi.org/10.1021/jacs.2c06611
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