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Interdomain Dynamics via Paramagnetic NMR on the Highly Flexible Complex Calmodulin/Munc13-1
[Image: see text] Paramagnetic NMR constraints are very useful to study protein interdomain motion, but their interpretation is not always straightforward. On the example of the particularly flexible complex Calmodulin/Munc13-1, we present a new approach to characterize this motion with pseudocontac...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9501808/ https://www.ncbi.nlm.nih.gov/pubmed/36082939 http://dx.doi.org/10.1021/jacs.2c06611 |
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author | Karschin, Niels Becker, Stefan Griesinger, Christian |
author_facet | Karschin, Niels Becker, Stefan Griesinger, Christian |
author_sort | Karschin, Niels |
collection | PubMed |
description | [Image: see text] Paramagnetic NMR constraints are very useful to study protein interdomain motion, but their interpretation is not always straightforward. On the example of the particularly flexible complex Calmodulin/Munc13-1, we present a new approach to characterize this motion with pseudocontact shifts and residual dipolar couplings. Using molecular mechanics, we sampled the conformational space of the complex and used a genetic algorithm to find ensembles that are in agreement with the data. We used the Bayesian information criterion to determine the ideal ensemble size. This way, we were able to make an accurate, unambiguous, reproducible model of the interdomain motion of Calmodulin/Munc13-1 without prior knowledge about the domain orientation from crystallography. |
format | Online Article Text |
id | pubmed-9501808 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-95018082022-09-24 Interdomain Dynamics via Paramagnetic NMR on the Highly Flexible Complex Calmodulin/Munc13-1 Karschin, Niels Becker, Stefan Griesinger, Christian J Am Chem Soc [Image: see text] Paramagnetic NMR constraints are very useful to study protein interdomain motion, but their interpretation is not always straightforward. On the example of the particularly flexible complex Calmodulin/Munc13-1, we present a new approach to characterize this motion with pseudocontact shifts and residual dipolar couplings. Using molecular mechanics, we sampled the conformational space of the complex and used a genetic algorithm to find ensembles that are in agreement with the data. We used the Bayesian information criterion to determine the ideal ensemble size. This way, we were able to make an accurate, unambiguous, reproducible model of the interdomain motion of Calmodulin/Munc13-1 without prior knowledge about the domain orientation from crystallography. American Chemical Society 2022-09-09 2022-09-21 /pmc/articles/PMC9501808/ /pubmed/36082939 http://dx.doi.org/10.1021/jacs.2c06611 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Karschin, Niels Becker, Stefan Griesinger, Christian Interdomain Dynamics via Paramagnetic NMR on the Highly Flexible Complex Calmodulin/Munc13-1 |
title | Interdomain Dynamics
via Paramagnetic NMR on the Highly
Flexible Complex Calmodulin/Munc13-1 |
title_full | Interdomain Dynamics
via Paramagnetic NMR on the Highly
Flexible Complex Calmodulin/Munc13-1 |
title_fullStr | Interdomain Dynamics
via Paramagnetic NMR on the Highly
Flexible Complex Calmodulin/Munc13-1 |
title_full_unstemmed | Interdomain Dynamics
via Paramagnetic NMR on the Highly
Flexible Complex Calmodulin/Munc13-1 |
title_short | Interdomain Dynamics
via Paramagnetic NMR on the Highly
Flexible Complex Calmodulin/Munc13-1 |
title_sort | interdomain dynamics
via paramagnetic nmr on the highly
flexible complex calmodulin/munc13-1 |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9501808/ https://www.ncbi.nlm.nih.gov/pubmed/36082939 http://dx.doi.org/10.1021/jacs.2c06611 |
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