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Nomogram-Based Chronic Kidney Disease Prediction Model for Type 1 Diabetes Mellitus Patients Using Routine Pathological Data

Type 1 diabetes mellitus (T1DM) patients are a significant threat to chronic kidney disease (CKD) development during their life. However, there is always a high chance of delay in CKD detection because CKD can be asymptomatic, and T1DM patients bypass traditional CKD tests during their routine check...

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Autores principales: Chowdhury, Nakib Hayat, Reaz, Mamun Bin Ibne, Ali, Sawal Hamid Md, Ahmad, Shamim, Crespo, María Liz, Cicuttin, Andrés, Haque, Fahmida, Bakar, Ahmad Ashrif A., Bhuiyan, Mohammad Arif Sobhan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9501949/
https://www.ncbi.nlm.nih.gov/pubmed/36143293
http://dx.doi.org/10.3390/jpm12091507
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author Chowdhury, Nakib Hayat
Reaz, Mamun Bin Ibne
Ali, Sawal Hamid Md
Ahmad, Shamim
Crespo, María Liz
Cicuttin, Andrés
Haque, Fahmida
Bakar, Ahmad Ashrif A.
Bhuiyan, Mohammad Arif Sobhan
author_facet Chowdhury, Nakib Hayat
Reaz, Mamun Bin Ibne
Ali, Sawal Hamid Md
Ahmad, Shamim
Crespo, María Liz
Cicuttin, Andrés
Haque, Fahmida
Bakar, Ahmad Ashrif A.
Bhuiyan, Mohammad Arif Sobhan
author_sort Chowdhury, Nakib Hayat
collection PubMed
description Type 1 diabetes mellitus (T1DM) patients are a significant threat to chronic kidney disease (CKD) development during their life. However, there is always a high chance of delay in CKD detection because CKD can be asymptomatic, and T1DM patients bypass traditional CKD tests during their routine checkups. This study aims to develop and validate a prediction model and nomogram of CKD in T1DM patients using readily available routine checkup data for early CKD detection. This research utilized 1375 T1DM patients’ sixteen years of longitudinal data from multi-center Epidemiology of Diabetes Interventions and Complications (EDIC) clinical trials conducted at 28 sites in the USA and Canada and considered 17 routinely available features. Three feature ranking algorithms, extreme gradient boosting (XGB), random forest (RF), and extremely randomized trees classifier (ERT), were applied to create three feature ranking lists, and logistic regression analyses were performed to develop CKD prediction models using these ranked feature lists to identify the best performing top-ranked features combination. Finally, the most significant features were selected to develop a multivariate logistic regression-based CKD prediction model for T1DM patients. This model was evaluated using sensitivity, specificity, accuracy, precision, and F1 score on train and test data. A nomogram of the final model was further generated for easy application in clinical practices. Hypertension, duration of diabetes, drinking habit, triglycerides, ACE inhibitors, low-density lipoprotein (LDL) cholesterol, age, and smoking habit were the top-8 features ranked by the XGB model and identified as the most important features for predicting CKD in T1DM patients. These eight features were selected to develop the final prediction model using multivariate logistic regression, which showed 90.04% and 88.59% accuracy in internal and test data validation. The proposed model showed excellent performance and can be used for CKD identification in T1DM patients during routine checkups.
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spelling pubmed-95019492022-09-24 Nomogram-Based Chronic Kidney Disease Prediction Model for Type 1 Diabetes Mellitus Patients Using Routine Pathological Data Chowdhury, Nakib Hayat Reaz, Mamun Bin Ibne Ali, Sawal Hamid Md Ahmad, Shamim Crespo, María Liz Cicuttin, Andrés Haque, Fahmida Bakar, Ahmad Ashrif A. Bhuiyan, Mohammad Arif Sobhan J Pers Med Article Type 1 diabetes mellitus (T1DM) patients are a significant threat to chronic kidney disease (CKD) development during their life. However, there is always a high chance of delay in CKD detection because CKD can be asymptomatic, and T1DM patients bypass traditional CKD tests during their routine checkups. This study aims to develop and validate a prediction model and nomogram of CKD in T1DM patients using readily available routine checkup data for early CKD detection. This research utilized 1375 T1DM patients’ sixteen years of longitudinal data from multi-center Epidemiology of Diabetes Interventions and Complications (EDIC) clinical trials conducted at 28 sites in the USA and Canada and considered 17 routinely available features. Three feature ranking algorithms, extreme gradient boosting (XGB), random forest (RF), and extremely randomized trees classifier (ERT), were applied to create three feature ranking lists, and logistic regression analyses were performed to develop CKD prediction models using these ranked feature lists to identify the best performing top-ranked features combination. Finally, the most significant features were selected to develop a multivariate logistic regression-based CKD prediction model for T1DM patients. This model was evaluated using sensitivity, specificity, accuracy, precision, and F1 score on train and test data. A nomogram of the final model was further generated for easy application in clinical practices. Hypertension, duration of diabetes, drinking habit, triglycerides, ACE inhibitors, low-density lipoprotein (LDL) cholesterol, age, and smoking habit were the top-8 features ranked by the XGB model and identified as the most important features for predicting CKD in T1DM patients. These eight features were selected to develop the final prediction model using multivariate logistic regression, which showed 90.04% and 88.59% accuracy in internal and test data validation. The proposed model showed excellent performance and can be used for CKD identification in T1DM patients during routine checkups. MDPI 2022-09-14 /pmc/articles/PMC9501949/ /pubmed/36143293 http://dx.doi.org/10.3390/jpm12091507 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Chowdhury, Nakib Hayat
Reaz, Mamun Bin Ibne
Ali, Sawal Hamid Md
Ahmad, Shamim
Crespo, María Liz
Cicuttin, Andrés
Haque, Fahmida
Bakar, Ahmad Ashrif A.
Bhuiyan, Mohammad Arif Sobhan
Nomogram-Based Chronic Kidney Disease Prediction Model for Type 1 Diabetes Mellitus Patients Using Routine Pathological Data
title Nomogram-Based Chronic Kidney Disease Prediction Model for Type 1 Diabetes Mellitus Patients Using Routine Pathological Data
title_full Nomogram-Based Chronic Kidney Disease Prediction Model for Type 1 Diabetes Mellitus Patients Using Routine Pathological Data
title_fullStr Nomogram-Based Chronic Kidney Disease Prediction Model for Type 1 Diabetes Mellitus Patients Using Routine Pathological Data
title_full_unstemmed Nomogram-Based Chronic Kidney Disease Prediction Model for Type 1 Diabetes Mellitus Patients Using Routine Pathological Data
title_short Nomogram-Based Chronic Kidney Disease Prediction Model for Type 1 Diabetes Mellitus Patients Using Routine Pathological Data
title_sort nomogram-based chronic kidney disease prediction model for type 1 diabetes mellitus patients using routine pathological data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9501949/
https://www.ncbi.nlm.nih.gov/pubmed/36143293
http://dx.doi.org/10.3390/jpm12091507
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