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Super-Resolution Reconstruction of Cytoskeleton Image Based on A-Net Deep Learning Network

To date, live-cell imaging at the nanometer scale remains challenging. Even though super-resolution microscopy methods have enabled visualization of sub-cellular structures below the optical resolution limit, the spatial resolution is still far from enough for the structural reconstruction of biomol...

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Detalles Bibliográficos
Autores principales: Chen, Qian, Bai, Haoxin, Che, Bingchen, Zhao, Tianyun, Zhang, Ce, Wang, Kaige, Bai, Jintao, Zhao, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9501965/
https://www.ncbi.nlm.nih.gov/pubmed/36144138
http://dx.doi.org/10.3390/mi13091515
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author Chen, Qian
Bai, Haoxin
Che, Bingchen
Zhao, Tianyun
Zhang, Ce
Wang, Kaige
Bai, Jintao
Zhao, Wei
author_facet Chen, Qian
Bai, Haoxin
Che, Bingchen
Zhao, Tianyun
Zhang, Ce
Wang, Kaige
Bai, Jintao
Zhao, Wei
author_sort Chen, Qian
collection PubMed
description To date, live-cell imaging at the nanometer scale remains challenging. Even though super-resolution microscopy methods have enabled visualization of sub-cellular structures below the optical resolution limit, the spatial resolution is still far from enough for the structural reconstruction of biomolecules in vivo (i.e., ~24 nm thickness of microtubule fiber). In this study, a deep learning network named A-net was developed and shows that the resolution of cytoskeleton images captured by a confocal microscope can be significantly improved by combining the A-net deep learning network with the DWDC algorithm based on a degradation model. Utilizing the DWDC algorithm to construct new datasets and taking advantage of A-net neural network’s features (i.e., considerably fewer layers and relatively small dataset), the noise and flocculent structures which originally interfere with the cellular structure in the raw image are significantly removed, with the spatial resolution improved by a factor of 10. The investigation shows a universal approach for exacting structural details of biomolecules, cells and organs from low-resolution images.
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spelling pubmed-95019652022-09-24 Super-Resolution Reconstruction of Cytoskeleton Image Based on A-Net Deep Learning Network Chen, Qian Bai, Haoxin Che, Bingchen Zhao, Tianyun Zhang, Ce Wang, Kaige Bai, Jintao Zhao, Wei Micromachines (Basel) Article To date, live-cell imaging at the nanometer scale remains challenging. Even though super-resolution microscopy methods have enabled visualization of sub-cellular structures below the optical resolution limit, the spatial resolution is still far from enough for the structural reconstruction of biomolecules in vivo (i.e., ~24 nm thickness of microtubule fiber). In this study, a deep learning network named A-net was developed and shows that the resolution of cytoskeleton images captured by a confocal microscope can be significantly improved by combining the A-net deep learning network with the DWDC algorithm based on a degradation model. Utilizing the DWDC algorithm to construct new datasets and taking advantage of A-net neural network’s features (i.e., considerably fewer layers and relatively small dataset), the noise and flocculent structures which originally interfere with the cellular structure in the raw image are significantly removed, with the spatial resolution improved by a factor of 10. The investigation shows a universal approach for exacting structural details of biomolecules, cells and organs from low-resolution images. MDPI 2022-09-13 /pmc/articles/PMC9501965/ /pubmed/36144138 http://dx.doi.org/10.3390/mi13091515 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Chen, Qian
Bai, Haoxin
Che, Bingchen
Zhao, Tianyun
Zhang, Ce
Wang, Kaige
Bai, Jintao
Zhao, Wei
Super-Resolution Reconstruction of Cytoskeleton Image Based on A-Net Deep Learning Network
title Super-Resolution Reconstruction of Cytoskeleton Image Based on A-Net Deep Learning Network
title_full Super-Resolution Reconstruction of Cytoskeleton Image Based on A-Net Deep Learning Network
title_fullStr Super-Resolution Reconstruction of Cytoskeleton Image Based on A-Net Deep Learning Network
title_full_unstemmed Super-Resolution Reconstruction of Cytoskeleton Image Based on A-Net Deep Learning Network
title_short Super-Resolution Reconstruction of Cytoskeleton Image Based on A-Net Deep Learning Network
title_sort super-resolution reconstruction of cytoskeleton image based on a-net deep learning network
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9501965/
https://www.ncbi.nlm.nih.gov/pubmed/36144138
http://dx.doi.org/10.3390/mi13091515
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