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Super-Resolution Reconstruction of Cytoskeleton Image Based on A-Net Deep Learning Network
To date, live-cell imaging at the nanometer scale remains challenging. Even though super-resolution microscopy methods have enabled visualization of sub-cellular structures below the optical resolution limit, the spatial resolution is still far from enough for the structural reconstruction of biomol...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9501965/ https://www.ncbi.nlm.nih.gov/pubmed/36144138 http://dx.doi.org/10.3390/mi13091515 |
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author | Chen, Qian Bai, Haoxin Che, Bingchen Zhao, Tianyun Zhang, Ce Wang, Kaige Bai, Jintao Zhao, Wei |
author_facet | Chen, Qian Bai, Haoxin Che, Bingchen Zhao, Tianyun Zhang, Ce Wang, Kaige Bai, Jintao Zhao, Wei |
author_sort | Chen, Qian |
collection | PubMed |
description | To date, live-cell imaging at the nanometer scale remains challenging. Even though super-resolution microscopy methods have enabled visualization of sub-cellular structures below the optical resolution limit, the spatial resolution is still far from enough for the structural reconstruction of biomolecules in vivo (i.e., ~24 nm thickness of microtubule fiber). In this study, a deep learning network named A-net was developed and shows that the resolution of cytoskeleton images captured by a confocal microscope can be significantly improved by combining the A-net deep learning network with the DWDC algorithm based on a degradation model. Utilizing the DWDC algorithm to construct new datasets and taking advantage of A-net neural network’s features (i.e., considerably fewer layers and relatively small dataset), the noise and flocculent structures which originally interfere with the cellular structure in the raw image are significantly removed, with the spatial resolution improved by a factor of 10. The investigation shows a universal approach for exacting structural details of biomolecules, cells and organs from low-resolution images. |
format | Online Article Text |
id | pubmed-9501965 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-95019652022-09-24 Super-Resolution Reconstruction of Cytoskeleton Image Based on A-Net Deep Learning Network Chen, Qian Bai, Haoxin Che, Bingchen Zhao, Tianyun Zhang, Ce Wang, Kaige Bai, Jintao Zhao, Wei Micromachines (Basel) Article To date, live-cell imaging at the nanometer scale remains challenging. Even though super-resolution microscopy methods have enabled visualization of sub-cellular structures below the optical resolution limit, the spatial resolution is still far from enough for the structural reconstruction of biomolecules in vivo (i.e., ~24 nm thickness of microtubule fiber). In this study, a deep learning network named A-net was developed and shows that the resolution of cytoskeleton images captured by a confocal microscope can be significantly improved by combining the A-net deep learning network with the DWDC algorithm based on a degradation model. Utilizing the DWDC algorithm to construct new datasets and taking advantage of A-net neural network’s features (i.e., considerably fewer layers and relatively small dataset), the noise and flocculent structures which originally interfere with the cellular structure in the raw image are significantly removed, with the spatial resolution improved by a factor of 10. The investigation shows a universal approach for exacting structural details of biomolecules, cells and organs from low-resolution images. MDPI 2022-09-13 /pmc/articles/PMC9501965/ /pubmed/36144138 http://dx.doi.org/10.3390/mi13091515 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Chen, Qian Bai, Haoxin Che, Bingchen Zhao, Tianyun Zhang, Ce Wang, Kaige Bai, Jintao Zhao, Wei Super-Resolution Reconstruction of Cytoskeleton Image Based on A-Net Deep Learning Network |
title | Super-Resolution Reconstruction of Cytoskeleton Image Based on A-Net Deep Learning Network |
title_full | Super-Resolution Reconstruction of Cytoskeleton Image Based on A-Net Deep Learning Network |
title_fullStr | Super-Resolution Reconstruction of Cytoskeleton Image Based on A-Net Deep Learning Network |
title_full_unstemmed | Super-Resolution Reconstruction of Cytoskeleton Image Based on A-Net Deep Learning Network |
title_short | Super-Resolution Reconstruction of Cytoskeleton Image Based on A-Net Deep Learning Network |
title_sort | super-resolution reconstruction of cytoskeleton image based on a-net deep learning network |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9501965/ https://www.ncbi.nlm.nih.gov/pubmed/36144138 http://dx.doi.org/10.3390/mi13091515 |
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