Cargando…
Elucidating the Role of O(2) Uncoupling in the Oxidative Biodegradation of Organic Contaminants by Rieske Non-heme Iron Dioxygenases
[Image: see text] Oxygenations of aromatic soil and water contaminants with molecular O(2) catalyzed by Rieske dioxygenases are frequent initial steps of biodegradation in natural and engineered environments. Many of these non-heme ferrous iron enzymes are known to be involved in contaminant metabol...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9502038/ https://www.ncbi.nlm.nih.gov/pubmed/36164353 http://dx.doi.org/10.1021/acsenvironau.2c00023 |
_version_ | 1784795610886438912 |
---|---|
author | Bopp, Charlotte E. Bernet, Nora M. Kohler, Hans-Peter E. Hofstetter, Thomas B. |
author_facet | Bopp, Charlotte E. Bernet, Nora M. Kohler, Hans-Peter E. Hofstetter, Thomas B. |
author_sort | Bopp, Charlotte E. |
collection | PubMed |
description | [Image: see text] Oxygenations of aromatic soil and water contaminants with molecular O(2) catalyzed by Rieske dioxygenases are frequent initial steps of biodegradation in natural and engineered environments. Many of these non-heme ferrous iron enzymes are known to be involved in contaminant metabolism, but the understanding of enzyme–substrate interactions that lead to successful biodegradation is still elusive. Here, we studied the mechanisms of O(2) activation and substrate hydroxylation of two nitroarene dioxygenases to evaluate enzyme- and substrate-specific factors that determine the efficiency of oxygenated product formation. Experiments in enzyme assays of 2-nitrotoluene dioxygenase (2NTDO) and nitrobenzene dioxygenase (NBDO) with methyl-, fluoro-, chloro-, and hydroxy-substituted nitroaromatic substrates reveal that typically 20–100% of the enzyme’s activity involves unproductive paths of O(2) activation with generation of reactive oxygen species through so-called O(2) uncoupling. The (18)O and (13)C kinetic isotope effects of O(2) activation and nitroaromatic substrate hydroxylation, respectively, suggest that O(2) uncoupling occurs after generation of Fe(III)-(hydro)peroxo species in the catalytic cycle. While 2NTDO hydroxylates ortho-substituted nitroaromatic substrates more efficiently, NBDO favors meta-substituted, presumably due to distinct active site residues of the two enzymes. Our data implies, however, that the O(2) uncoupling and hydroxylation activity cannot be assessed from simple structure–reactivity relationships. By quantifying O(2) uncoupling by Rieske dioxygenases, our work provides a mechanistic link between contaminant biodegradation, the generation of reactive oxygen species, and possible adaptation strategies of microorganisms to the exposure of new contaminants. |
format | Online Article Text |
id | pubmed-9502038 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-95020382022-09-24 Elucidating the Role of O(2) Uncoupling in the Oxidative Biodegradation of Organic Contaminants by Rieske Non-heme Iron Dioxygenases Bopp, Charlotte E. Bernet, Nora M. Kohler, Hans-Peter E. Hofstetter, Thomas B. ACS Environ Au [Image: see text] Oxygenations of aromatic soil and water contaminants with molecular O(2) catalyzed by Rieske dioxygenases are frequent initial steps of biodegradation in natural and engineered environments. Many of these non-heme ferrous iron enzymes are known to be involved in contaminant metabolism, but the understanding of enzyme–substrate interactions that lead to successful biodegradation is still elusive. Here, we studied the mechanisms of O(2) activation and substrate hydroxylation of two nitroarene dioxygenases to evaluate enzyme- and substrate-specific factors that determine the efficiency of oxygenated product formation. Experiments in enzyme assays of 2-nitrotoluene dioxygenase (2NTDO) and nitrobenzene dioxygenase (NBDO) with methyl-, fluoro-, chloro-, and hydroxy-substituted nitroaromatic substrates reveal that typically 20–100% of the enzyme’s activity involves unproductive paths of O(2) activation with generation of reactive oxygen species through so-called O(2) uncoupling. The (18)O and (13)C kinetic isotope effects of O(2) activation and nitroaromatic substrate hydroxylation, respectively, suggest that O(2) uncoupling occurs after generation of Fe(III)-(hydro)peroxo species in the catalytic cycle. While 2NTDO hydroxylates ortho-substituted nitroaromatic substrates more efficiently, NBDO favors meta-substituted, presumably due to distinct active site residues of the two enzymes. Our data implies, however, that the O(2) uncoupling and hydroxylation activity cannot be assessed from simple structure–reactivity relationships. By quantifying O(2) uncoupling by Rieske dioxygenases, our work provides a mechanistic link between contaminant biodegradation, the generation of reactive oxygen species, and possible adaptation strategies of microorganisms to the exposure of new contaminants. American Chemical Society 2022-07-07 /pmc/articles/PMC9502038/ /pubmed/36164353 http://dx.doi.org/10.1021/acsenvironau.2c00023 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Bopp, Charlotte E. Bernet, Nora M. Kohler, Hans-Peter E. Hofstetter, Thomas B. Elucidating the Role of O(2) Uncoupling in the Oxidative Biodegradation of Organic Contaminants by Rieske Non-heme Iron Dioxygenases |
title | Elucidating the Role of O(2) Uncoupling in
the Oxidative Biodegradation of Organic Contaminants by Rieske Non-heme
Iron Dioxygenases |
title_full | Elucidating the Role of O(2) Uncoupling in
the Oxidative Biodegradation of Organic Contaminants by Rieske Non-heme
Iron Dioxygenases |
title_fullStr | Elucidating the Role of O(2) Uncoupling in
the Oxidative Biodegradation of Organic Contaminants by Rieske Non-heme
Iron Dioxygenases |
title_full_unstemmed | Elucidating the Role of O(2) Uncoupling in
the Oxidative Biodegradation of Organic Contaminants by Rieske Non-heme
Iron Dioxygenases |
title_short | Elucidating the Role of O(2) Uncoupling in
the Oxidative Biodegradation of Organic Contaminants by Rieske Non-heme
Iron Dioxygenases |
title_sort | elucidating the role of o(2) uncoupling in
the oxidative biodegradation of organic contaminants by rieske non-heme
iron dioxygenases |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9502038/ https://www.ncbi.nlm.nih.gov/pubmed/36164353 http://dx.doi.org/10.1021/acsenvironau.2c00023 |
work_keys_str_mv | AT boppcharlottee elucidatingtheroleofo2uncouplingintheoxidativebiodegradationoforganiccontaminantsbyrieskenonhemeirondioxygenases AT bernetnoram elucidatingtheroleofo2uncouplingintheoxidativebiodegradationoforganiccontaminantsbyrieskenonhemeirondioxygenases AT kohlerhanspetere elucidatingtheroleofo2uncouplingintheoxidativebiodegradationoforganiccontaminantsbyrieskenonhemeirondioxygenases AT hofstetterthomasb elucidatingtheroleofo2uncouplingintheoxidativebiodegradationoforganiccontaminantsbyrieskenonhemeirondioxygenases |