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Modeling pK(a) of the Brønsted Bases as an Approach to the Gibbs Energy of the Proton in Acetonitrile
A simple but efficient computational approach to calculate pK(a) in acetonitrile for a set of phosphorus, nitrogen, and carbon bases was established. A linear function that describes relations between the calculated ΔG’(a.sol)(BH(+)) and pK(a) values was determined for each group of bases. The best...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9502073/ https://www.ncbi.nlm.nih.gov/pubmed/36142490 http://dx.doi.org/10.3390/ijms231810576 |
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author | Glasovac, Zoran Kovačević, Borislav |
author_facet | Glasovac, Zoran Kovačević, Borislav |
author_sort | Glasovac, Zoran |
collection | PubMed |
description | A simple but efficient computational approach to calculate pK(a) in acetonitrile for a set of phosphorus, nitrogen, and carbon bases was established. A linear function that describes relations between the calculated ΔG’(a.sol)(BH(+)) and pK(a) values was determined for each group of bases. The best model was obtained through the variations in the basis set, in the level of theory (density functionals or MP2), and in the continuum solvation model (IPCM, CPCM, or SMD). The combination of the IPCM/B3LYP/6-311+G(d,p) solvation approach with MP2/6-311+G(2df,p)//B3LYP/6-31G(d) gas-phase energies provided very good results for all three groups of bases with R(2) values close to or above 0.99. Interestingly, the slopes and the intercepts of the obtained linear functions showed significant deviations from the theoretical values. We made a linear plot utilizing all the conducted calculations and all the structural variations and employed methods to prove the systematic nature of the intercept/slope dependence. The interpolation of the intercept to the ideal slope value enabled us to determine the Gibbs energy of the proton in acetonitrile, which amounted to −258.8 kcal mol(−1). The obtained value was in excellent agreement with previously published results. |
format | Online Article Text |
id | pubmed-9502073 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-95020732022-09-24 Modeling pK(a) of the Brønsted Bases as an Approach to the Gibbs Energy of the Proton in Acetonitrile Glasovac, Zoran Kovačević, Borislav Int J Mol Sci Article A simple but efficient computational approach to calculate pK(a) in acetonitrile for a set of phosphorus, nitrogen, and carbon bases was established. A linear function that describes relations between the calculated ΔG’(a.sol)(BH(+)) and pK(a) values was determined for each group of bases. The best model was obtained through the variations in the basis set, in the level of theory (density functionals or MP2), and in the continuum solvation model (IPCM, CPCM, or SMD). The combination of the IPCM/B3LYP/6-311+G(d,p) solvation approach with MP2/6-311+G(2df,p)//B3LYP/6-31G(d) gas-phase energies provided very good results for all three groups of bases with R(2) values close to or above 0.99. Interestingly, the slopes and the intercepts of the obtained linear functions showed significant deviations from the theoretical values. We made a linear plot utilizing all the conducted calculations and all the structural variations and employed methods to prove the systematic nature of the intercept/slope dependence. The interpolation of the intercept to the ideal slope value enabled us to determine the Gibbs energy of the proton in acetonitrile, which amounted to −258.8 kcal mol(−1). The obtained value was in excellent agreement with previously published results. MDPI 2022-09-12 /pmc/articles/PMC9502073/ /pubmed/36142490 http://dx.doi.org/10.3390/ijms231810576 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Glasovac, Zoran Kovačević, Borislav Modeling pK(a) of the Brønsted Bases as an Approach to the Gibbs Energy of the Proton in Acetonitrile |
title | Modeling pK(a) of the Brønsted Bases as an Approach to the Gibbs Energy of the Proton in Acetonitrile |
title_full | Modeling pK(a) of the Brønsted Bases as an Approach to the Gibbs Energy of the Proton in Acetonitrile |
title_fullStr | Modeling pK(a) of the Brønsted Bases as an Approach to the Gibbs Energy of the Proton in Acetonitrile |
title_full_unstemmed | Modeling pK(a) of the Brønsted Bases as an Approach to the Gibbs Energy of the Proton in Acetonitrile |
title_short | Modeling pK(a) of the Brønsted Bases as an Approach to the Gibbs Energy of the Proton in Acetonitrile |
title_sort | modeling pk(a) of the brønsted bases as an approach to the gibbs energy of the proton in acetonitrile |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9502073/ https://www.ncbi.nlm.nih.gov/pubmed/36142490 http://dx.doi.org/10.3390/ijms231810576 |
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