ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy

SUMMARY: ITSoneWB (ITSone WorkBench) is a Galaxy-based bioinformatic environment where comprehensive and high-quality reference data are connected with established pipelines and new tools in an automated and easy-to-use service targeted at global taxonomic analysis of eukaryotic communities based on...

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Detalles Bibliográficos
Autores principales: Tangaro, Marco A, Defazio, Giuseppe, Fosso, Bruno, Licciulli, Vito Flavio, Grillo, Giorgio, Donvito, Giacinto, Lavezzo, Enrico, Baruzzo, Giacomo, Pesole, Graziano, Santamaria, Monica
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9502156/
https://www.ncbi.nlm.nih.gov/pubmed/34117876
http://dx.doi.org/10.1093/bioinformatics/btab431
Descripción
Sumario:SUMMARY: ITSoneWB (ITSone WorkBench) is a Galaxy-based bioinformatic environment where comprehensive and high-quality reference data are connected with established pipelines and new tools in an automated and easy-to-use service targeted at global taxonomic analysis of eukaryotic communities based on Internal Transcribed Spacer 1 variants high-throughput sequencing. AVAILABILITY AND IMPLEMENTATION: ITSoneWB has been deployed on the INFN-Bari ReCaS cloud facility and is freely available on the web at http://itsonewb.cloud.ba.infn.it/galaxy. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

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