ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy

SUMMARY: ITSoneWB (ITSone WorkBench) is a Galaxy-based bioinformatic environment where comprehensive and high-quality reference data are connected with established pipelines and new tools in an automated and easy-to-use service targeted at global taxonomic analysis of eukaryotic communities based on...

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Autores principales: Tangaro, Marco A, Defazio, Giuseppe, Fosso, Bruno, Licciulli, Vito Flavio, Grillo, Giorgio, Donvito, Giacinto, Lavezzo, Enrico, Baruzzo, Giacomo, Pesole, Graziano, Santamaria, Monica
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9502156/
https://www.ncbi.nlm.nih.gov/pubmed/34117876
http://dx.doi.org/10.1093/bioinformatics/btab431
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author Tangaro, Marco A
Defazio, Giuseppe
Fosso, Bruno
Licciulli, Vito Flavio
Grillo, Giorgio
Donvito, Giacinto
Lavezzo, Enrico
Baruzzo, Giacomo
Pesole, Graziano
Santamaria, Monica
author_facet Tangaro, Marco A
Defazio, Giuseppe
Fosso, Bruno
Licciulli, Vito Flavio
Grillo, Giorgio
Donvito, Giacinto
Lavezzo, Enrico
Baruzzo, Giacomo
Pesole, Graziano
Santamaria, Monica
author_sort Tangaro, Marco A
collection PubMed
description SUMMARY: ITSoneWB (ITSone WorkBench) is a Galaxy-based bioinformatic environment where comprehensive and high-quality reference data are connected with established pipelines and new tools in an automated and easy-to-use service targeted at global taxonomic analysis of eukaryotic communities based on Internal Transcribed Spacer 1 variants high-throughput sequencing. AVAILABILITY AND IMPLEMENTATION: ITSoneWB has been deployed on the INFN-Bari ReCaS cloud facility and is freely available on the web at http://itsonewb.cloud.ba.infn.it/galaxy. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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spelling pubmed-95021562022-09-26 ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy Tangaro, Marco A Defazio, Giuseppe Fosso, Bruno Licciulli, Vito Flavio Grillo, Giorgio Donvito, Giacinto Lavezzo, Enrico Baruzzo, Giacomo Pesole, Graziano Santamaria, Monica Bioinformatics Applications Notes SUMMARY: ITSoneWB (ITSone WorkBench) is a Galaxy-based bioinformatic environment where comprehensive and high-quality reference data are connected with established pipelines and new tools in an automated and easy-to-use service targeted at global taxonomic analysis of eukaryotic communities based on Internal Transcribed Spacer 1 variants high-throughput sequencing. AVAILABILITY AND IMPLEMENTATION: ITSoneWB has been deployed on the INFN-Bari ReCaS cloud facility and is freely available on the web at http://itsonewb.cloud.ba.infn.it/galaxy. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2021-06-12 /pmc/articles/PMC9502156/ /pubmed/34117876 http://dx.doi.org/10.1093/bioinformatics/btab431 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Applications Notes
Tangaro, Marco A
Defazio, Giuseppe
Fosso, Bruno
Licciulli, Vito Flavio
Grillo, Giorgio
Donvito, Giacinto
Lavezzo, Enrico
Baruzzo, Giacomo
Pesole, Graziano
Santamaria, Monica
ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy
title ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy
title_full ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy
title_fullStr ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy
title_full_unstemmed ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy
title_short ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy
title_sort itsonewb: profiling global taxonomic diversity of eukaryotic communities on galaxy
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9502156/
https://www.ncbi.nlm.nih.gov/pubmed/34117876
http://dx.doi.org/10.1093/bioinformatics/btab431
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