Cargando…

Selective Electrochemical Detection of SARS-CoV-2 Using Deep Learning

COVID-19 has been in the headlines for the past two years. Diagnosing this infection with minimal false rates is still an issue even with the advent of multiple rapid antigen tests. Enormous data are being collected every day that could provide insight into reducing the false diagnosis. Machine lear...

Descripción completa

Detalles Bibliográficos
Autores principales: Gecgel, Ozhan, Ramanujam, Ashwin, Botte, Gerardine G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9502341/
https://www.ncbi.nlm.nih.gov/pubmed/36146738
http://dx.doi.org/10.3390/v14091930
_version_ 1784795681002618880
author Gecgel, Ozhan
Ramanujam, Ashwin
Botte, Gerardine G.
author_facet Gecgel, Ozhan
Ramanujam, Ashwin
Botte, Gerardine G.
author_sort Gecgel, Ozhan
collection PubMed
description COVID-19 has been in the headlines for the past two years. Diagnosing this infection with minimal false rates is still an issue even with the advent of multiple rapid antigen tests. Enormous data are being collected every day that could provide insight into reducing the false diagnosis. Machine learning (ML) and deep learning (DL) could be the way forward to process these data and reduce the false diagnosis rates. In this study, ML and DL approaches have been applied to the data set collected using an ultra-fast COVID-19 diagnostic sensor (UFC-19). The ability of ML and DL to specifically detect SARS-CoV-2 signals against SARS-CoV, MERS-CoV, Human CoV, and Influenza was investigated. UFC-19 is an electrochemical sensor that was used to test these virus samples and the obtained current response dataset was used to diagnose SARS-CoV-2 using different algorithms. Our results indicate that the convolution neural networks algorithm could diagnose SARS-CoV-2 samples with a sensitivity of 96.15%, specificity of 98.17%, and accuracy of 97.20%. Combining this DL model with the existing UFC-19 could selectively identify SARS-CoV-2 presence within two minutes.
format Online
Article
Text
id pubmed-9502341
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-95023412022-09-24 Selective Electrochemical Detection of SARS-CoV-2 Using Deep Learning Gecgel, Ozhan Ramanujam, Ashwin Botte, Gerardine G. Viruses Article COVID-19 has been in the headlines for the past two years. Diagnosing this infection with minimal false rates is still an issue even with the advent of multiple rapid antigen tests. Enormous data are being collected every day that could provide insight into reducing the false diagnosis. Machine learning (ML) and deep learning (DL) could be the way forward to process these data and reduce the false diagnosis rates. In this study, ML and DL approaches have been applied to the data set collected using an ultra-fast COVID-19 diagnostic sensor (UFC-19). The ability of ML and DL to specifically detect SARS-CoV-2 signals against SARS-CoV, MERS-CoV, Human CoV, and Influenza was investigated. UFC-19 is an electrochemical sensor that was used to test these virus samples and the obtained current response dataset was used to diagnose SARS-CoV-2 using different algorithms. Our results indicate that the convolution neural networks algorithm could diagnose SARS-CoV-2 samples with a sensitivity of 96.15%, specificity of 98.17%, and accuracy of 97.20%. Combining this DL model with the existing UFC-19 could selectively identify SARS-CoV-2 presence within two minutes. MDPI 2022-08-30 /pmc/articles/PMC9502341/ /pubmed/36146738 http://dx.doi.org/10.3390/v14091930 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Gecgel, Ozhan
Ramanujam, Ashwin
Botte, Gerardine G.
Selective Electrochemical Detection of SARS-CoV-2 Using Deep Learning
title Selective Electrochemical Detection of SARS-CoV-2 Using Deep Learning
title_full Selective Electrochemical Detection of SARS-CoV-2 Using Deep Learning
title_fullStr Selective Electrochemical Detection of SARS-CoV-2 Using Deep Learning
title_full_unstemmed Selective Electrochemical Detection of SARS-CoV-2 Using Deep Learning
title_short Selective Electrochemical Detection of SARS-CoV-2 Using Deep Learning
title_sort selective electrochemical detection of sars-cov-2 using deep learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9502341/
https://www.ncbi.nlm.nih.gov/pubmed/36146738
http://dx.doi.org/10.3390/v14091930
work_keys_str_mv AT gecgelozhan selectiveelectrochemicaldetectionofsarscov2usingdeeplearning
AT ramanujamashwin selectiveelectrochemicaldetectionofsarscov2usingdeeplearning
AT bottegerardineg selectiveelectrochemicaldetectionofsarscov2usingdeeplearning