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Selective Electrochemical Detection of SARS-CoV-2 Using Deep Learning
COVID-19 has been in the headlines for the past two years. Diagnosing this infection with minimal false rates is still an issue even with the advent of multiple rapid antigen tests. Enormous data are being collected every day that could provide insight into reducing the false diagnosis. Machine lear...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9502341/ https://www.ncbi.nlm.nih.gov/pubmed/36146738 http://dx.doi.org/10.3390/v14091930 |
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author | Gecgel, Ozhan Ramanujam, Ashwin Botte, Gerardine G. |
author_facet | Gecgel, Ozhan Ramanujam, Ashwin Botte, Gerardine G. |
author_sort | Gecgel, Ozhan |
collection | PubMed |
description | COVID-19 has been in the headlines for the past two years. Diagnosing this infection with minimal false rates is still an issue even with the advent of multiple rapid antigen tests. Enormous data are being collected every day that could provide insight into reducing the false diagnosis. Machine learning (ML) and deep learning (DL) could be the way forward to process these data and reduce the false diagnosis rates. In this study, ML and DL approaches have been applied to the data set collected using an ultra-fast COVID-19 diagnostic sensor (UFC-19). The ability of ML and DL to specifically detect SARS-CoV-2 signals against SARS-CoV, MERS-CoV, Human CoV, and Influenza was investigated. UFC-19 is an electrochemical sensor that was used to test these virus samples and the obtained current response dataset was used to diagnose SARS-CoV-2 using different algorithms. Our results indicate that the convolution neural networks algorithm could diagnose SARS-CoV-2 samples with a sensitivity of 96.15%, specificity of 98.17%, and accuracy of 97.20%. Combining this DL model with the existing UFC-19 could selectively identify SARS-CoV-2 presence within two minutes. |
format | Online Article Text |
id | pubmed-9502341 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-95023412022-09-24 Selective Electrochemical Detection of SARS-CoV-2 Using Deep Learning Gecgel, Ozhan Ramanujam, Ashwin Botte, Gerardine G. Viruses Article COVID-19 has been in the headlines for the past two years. Diagnosing this infection with minimal false rates is still an issue even with the advent of multiple rapid antigen tests. Enormous data are being collected every day that could provide insight into reducing the false diagnosis. Machine learning (ML) and deep learning (DL) could be the way forward to process these data and reduce the false diagnosis rates. In this study, ML and DL approaches have been applied to the data set collected using an ultra-fast COVID-19 diagnostic sensor (UFC-19). The ability of ML and DL to specifically detect SARS-CoV-2 signals against SARS-CoV, MERS-CoV, Human CoV, and Influenza was investigated. UFC-19 is an electrochemical sensor that was used to test these virus samples and the obtained current response dataset was used to diagnose SARS-CoV-2 using different algorithms. Our results indicate that the convolution neural networks algorithm could diagnose SARS-CoV-2 samples with a sensitivity of 96.15%, specificity of 98.17%, and accuracy of 97.20%. Combining this DL model with the existing UFC-19 could selectively identify SARS-CoV-2 presence within two minutes. MDPI 2022-08-30 /pmc/articles/PMC9502341/ /pubmed/36146738 http://dx.doi.org/10.3390/v14091930 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Gecgel, Ozhan Ramanujam, Ashwin Botte, Gerardine G. Selective Electrochemical Detection of SARS-CoV-2 Using Deep Learning |
title | Selective Electrochemical Detection of SARS-CoV-2 Using Deep Learning |
title_full | Selective Electrochemical Detection of SARS-CoV-2 Using Deep Learning |
title_fullStr | Selective Electrochemical Detection of SARS-CoV-2 Using Deep Learning |
title_full_unstemmed | Selective Electrochemical Detection of SARS-CoV-2 Using Deep Learning |
title_short | Selective Electrochemical Detection of SARS-CoV-2 Using Deep Learning |
title_sort | selective electrochemical detection of sars-cov-2 using deep learning |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9502341/ https://www.ncbi.nlm.nih.gov/pubmed/36146738 http://dx.doi.org/10.3390/v14091930 |
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