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Development and validation of algorithms to identify patients with chronic kidney disease and related chronic diseases across the Northern Territory, Australia

BACKGROUND: Electronic health records can be used for population-wide identification and monitoring of disease. The Territory Kidney Care project developed algorithms to identify individuals with chronic kidney disease (CKD) and several commonly comorbid chronic diseases. This study aims to describe...

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Autores principales: Chen, Winnie, Abeyaratne, Asanga, Gorham, Gillian, George, Pratish, Karepalli, Vijay, Tran, Dan, Brock, Christopher, Cass, Alan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9502610/
https://www.ncbi.nlm.nih.gov/pubmed/36151531
http://dx.doi.org/10.1186/s12882-022-02947-9
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author Chen, Winnie
Abeyaratne, Asanga
Gorham, Gillian
George, Pratish
Karepalli, Vijay
Tran, Dan
Brock, Christopher
Cass, Alan
author_facet Chen, Winnie
Abeyaratne, Asanga
Gorham, Gillian
George, Pratish
Karepalli, Vijay
Tran, Dan
Brock, Christopher
Cass, Alan
author_sort Chen, Winnie
collection PubMed
description BACKGROUND: Electronic health records can be used for population-wide identification and monitoring of disease. The Territory Kidney Care project developed algorithms to identify individuals with chronic kidney disease (CKD) and several commonly comorbid chronic diseases. This study aims to describe the development and validation of our algorithms for CKD, diabetes, hypertension, and cardiovascular disease. A secondary aim of the study was to describe data completeness of the Territory Kidney Care database. METHODS: The Territory Kidney Care database consolidates electronic health records from multiple health services including public hospitals (n = 6) and primary care health services (> 60) across the Northern Territory, Australia. Using the database (n = 48,569) we selected a stratified random sample of patients (n = 288), which included individuals with mild to end-stage CKD. Diagnostic accuracy of the algorithms was tested against blinded manual chart reviews. Data completeness of the database was also described. RESULTS: For CKD defined as CKD stage 1 or higher (eGFR of any level with albuminuria or persistent eGFR < 60 ml/min/1.73(2), including renal replacement therapy) overall algorithm sensitivity was 93% (95%CI 89 to 96%) and specificity was 73% (95%CI 64 to 82%). For CKD defined as CKD stage 3a or higher (eGFR < 60 ml/min/1.73(2)) algorithm sensitivity and specificity were 93% and 97% respectively. Among the CKD 1 to 5 staging algorithms, the CKD stage 5 algorithm was most accurate with > 99% sensitivity and specificity. For related comorbidities – algorithm sensitivity and specificity results were 75% and 97% for diabetes; 85% and 88% for hypertension; and 79% and 96% for cardiovascular disease. CONCLUSIONS: We developed and validated algorithms to identify CKD and related chronic diseases within electronic health records. Validation results showed that CKD algorithms have a high degree of diagnostic accuracy compared to traditional administrative codes. Our highly accurate algorithms present new opportunities in early kidney disease detection, monitoring, and epidemiological research. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12882-022-02947-9.
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spelling pubmed-95026102022-09-24 Development and validation of algorithms to identify patients with chronic kidney disease and related chronic diseases across the Northern Territory, Australia Chen, Winnie Abeyaratne, Asanga Gorham, Gillian George, Pratish Karepalli, Vijay Tran, Dan Brock, Christopher Cass, Alan BMC Nephrol Research BACKGROUND: Electronic health records can be used for population-wide identification and monitoring of disease. The Territory Kidney Care project developed algorithms to identify individuals with chronic kidney disease (CKD) and several commonly comorbid chronic diseases. This study aims to describe the development and validation of our algorithms for CKD, diabetes, hypertension, and cardiovascular disease. A secondary aim of the study was to describe data completeness of the Territory Kidney Care database. METHODS: The Territory Kidney Care database consolidates electronic health records from multiple health services including public hospitals (n = 6) and primary care health services (> 60) across the Northern Territory, Australia. Using the database (n = 48,569) we selected a stratified random sample of patients (n = 288), which included individuals with mild to end-stage CKD. Diagnostic accuracy of the algorithms was tested against blinded manual chart reviews. Data completeness of the database was also described. RESULTS: For CKD defined as CKD stage 1 or higher (eGFR of any level with albuminuria or persistent eGFR < 60 ml/min/1.73(2), including renal replacement therapy) overall algorithm sensitivity was 93% (95%CI 89 to 96%) and specificity was 73% (95%CI 64 to 82%). For CKD defined as CKD stage 3a or higher (eGFR < 60 ml/min/1.73(2)) algorithm sensitivity and specificity were 93% and 97% respectively. Among the CKD 1 to 5 staging algorithms, the CKD stage 5 algorithm was most accurate with > 99% sensitivity and specificity. For related comorbidities – algorithm sensitivity and specificity results were 75% and 97% for diabetes; 85% and 88% for hypertension; and 79% and 96% for cardiovascular disease. CONCLUSIONS: We developed and validated algorithms to identify CKD and related chronic diseases within electronic health records. Validation results showed that CKD algorithms have a high degree of diagnostic accuracy compared to traditional administrative codes. Our highly accurate algorithms present new opportunities in early kidney disease detection, monitoring, and epidemiological research. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12882-022-02947-9. BioMed Central 2022-09-23 /pmc/articles/PMC9502610/ /pubmed/36151531 http://dx.doi.org/10.1186/s12882-022-02947-9 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Chen, Winnie
Abeyaratne, Asanga
Gorham, Gillian
George, Pratish
Karepalli, Vijay
Tran, Dan
Brock, Christopher
Cass, Alan
Development and validation of algorithms to identify patients with chronic kidney disease and related chronic diseases across the Northern Territory, Australia
title Development and validation of algorithms to identify patients with chronic kidney disease and related chronic diseases across the Northern Territory, Australia
title_full Development and validation of algorithms to identify patients with chronic kidney disease and related chronic diseases across the Northern Territory, Australia
title_fullStr Development and validation of algorithms to identify patients with chronic kidney disease and related chronic diseases across the Northern Territory, Australia
title_full_unstemmed Development and validation of algorithms to identify patients with chronic kidney disease and related chronic diseases across the Northern Territory, Australia
title_short Development and validation of algorithms to identify patients with chronic kidney disease and related chronic diseases across the Northern Territory, Australia
title_sort development and validation of algorithms to identify patients with chronic kidney disease and related chronic diseases across the northern territory, australia
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9502610/
https://www.ncbi.nlm.nih.gov/pubmed/36151531
http://dx.doi.org/10.1186/s12882-022-02947-9
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