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Statistical Classification for Raman Spectra of Tumoral Genomic DNA
We exploit Surface-Enhanced Raman Scattering (SERS) to investigate aqueous droplets of genomic DNA deposited onto silver-coated silicon nanowires, and we show that it is possible to efficiently discriminate between spectra of tumoral and healthy cells. To assess the robustness of the proposed techni...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9503739/ https://www.ncbi.nlm.nih.gov/pubmed/36144012 http://dx.doi.org/10.3390/mi13091388 |
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author | Durastanti, Claudio Cirillo, Emilio N. M. De Benedictis, Ilaria Ledda, Mario Sciortino, Antonio Lisi, Antonella Convertino, Annalisa Mussi, Valentina |
author_facet | Durastanti, Claudio Cirillo, Emilio N. M. De Benedictis, Ilaria Ledda, Mario Sciortino, Antonio Lisi, Antonella Convertino, Annalisa Mussi, Valentina |
author_sort | Durastanti, Claudio |
collection | PubMed |
description | We exploit Surface-Enhanced Raman Scattering (SERS) to investigate aqueous droplets of genomic DNA deposited onto silver-coated silicon nanowires, and we show that it is possible to efficiently discriminate between spectra of tumoral and healthy cells. To assess the robustness of the proposed technique, we develop two different statistical approaches, one based on the Principal Components Analysis of spectral data and one based on the computation of the [Formula: see text] distance between spectra. Both methods prove to be highly efficient, and we test their accuracy via the Cohen’s [Formula: see text] statistics. We show that the synergistic combination of the SERS spectroscopy and the statistical analysis methods leads to efficient and fast cancer diagnostic applications allowing rapid and unexpansive discrimination between healthy and tumoral genomic DNA alternative to the more complex and expensive DNA sequencing. |
format | Online Article Text |
id | pubmed-9503739 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-95037392022-09-24 Statistical Classification for Raman Spectra of Tumoral Genomic DNA Durastanti, Claudio Cirillo, Emilio N. M. De Benedictis, Ilaria Ledda, Mario Sciortino, Antonio Lisi, Antonella Convertino, Annalisa Mussi, Valentina Micromachines (Basel) Article We exploit Surface-Enhanced Raman Scattering (SERS) to investigate aqueous droplets of genomic DNA deposited onto silver-coated silicon nanowires, and we show that it is possible to efficiently discriminate between spectra of tumoral and healthy cells. To assess the robustness of the proposed technique, we develop two different statistical approaches, one based on the Principal Components Analysis of spectral data and one based on the computation of the [Formula: see text] distance between spectra. Both methods prove to be highly efficient, and we test their accuracy via the Cohen’s [Formula: see text] statistics. We show that the synergistic combination of the SERS spectroscopy and the statistical analysis methods leads to efficient and fast cancer diagnostic applications allowing rapid and unexpansive discrimination between healthy and tumoral genomic DNA alternative to the more complex and expensive DNA sequencing. MDPI 2022-08-25 /pmc/articles/PMC9503739/ /pubmed/36144012 http://dx.doi.org/10.3390/mi13091388 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Durastanti, Claudio Cirillo, Emilio N. M. De Benedictis, Ilaria Ledda, Mario Sciortino, Antonio Lisi, Antonella Convertino, Annalisa Mussi, Valentina Statistical Classification for Raman Spectra of Tumoral Genomic DNA |
title | Statistical Classification for Raman Spectra of Tumoral Genomic DNA |
title_full | Statistical Classification for Raman Spectra of Tumoral Genomic DNA |
title_fullStr | Statistical Classification for Raman Spectra of Tumoral Genomic DNA |
title_full_unstemmed | Statistical Classification for Raman Spectra of Tumoral Genomic DNA |
title_short | Statistical Classification for Raman Spectra of Tumoral Genomic DNA |
title_sort | statistical classification for raman spectra of tumoral genomic dna |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9503739/ https://www.ncbi.nlm.nih.gov/pubmed/36144012 http://dx.doi.org/10.3390/mi13091388 |
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