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Comparative Study of Different Diagnostic Routine Methods for the Identification of Acinetobacter radioresistens

Recent publications indicate that A. radioresistens can cause infections in humans, even though it is rarely reported in routine diagnostics. However, the fact that it is infrequently detected may be explained by the misidentification of the species by conventional methods. It is also likely that A....

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Autores principales: Bigge, Richard, Bunk, Boyke, Rudolph, Wolfram W., Gunzer, Florian, Coldewey, Sina M., Riedel, Thomas, Schröttner, Percy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9503985/
https://www.ncbi.nlm.nih.gov/pubmed/36144369
http://dx.doi.org/10.3390/microorganisms10091767
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author Bigge, Richard
Bunk, Boyke
Rudolph, Wolfram W.
Gunzer, Florian
Coldewey, Sina M.
Riedel, Thomas
Schröttner, Percy
author_facet Bigge, Richard
Bunk, Boyke
Rudolph, Wolfram W.
Gunzer, Florian
Coldewey, Sina M.
Riedel, Thomas
Schröttner, Percy
author_sort Bigge, Richard
collection PubMed
description Recent publications indicate that A. radioresistens can cause infections in humans, even though it is rarely reported in routine diagnostics. However, the fact that it is infrequently detected may be explained by the misidentification of the species by conventional methods. It is also likely that A. radioresistens is not considered clinically relevant and therefore not consistently included in diagnostic results. To elucidate the medical significance of this probably clinically underestimated bacterial species, we created a well-documented reference strain collection of 21 strains collected in routine diagnostics. For further analysis of A. radioresistens, it is essential to know which methods can be used to achieve a trustworthy identification. We, therefore, compared three methods widely used in routine diagnostics (MALDI-TOF MS, VITEK 2, and sequencing of housekeeping genes) in terms of secure and reliable identification of A. radioresistens. As reference methods, whole genome-based approaches were applied. VITEK 2 led to misidentification for four strains. However, MALDI-TOF MS and sequencing of housekeeping genes led to reliable and robust identifications.
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spelling pubmed-95039852022-09-24 Comparative Study of Different Diagnostic Routine Methods for the Identification of Acinetobacter radioresistens Bigge, Richard Bunk, Boyke Rudolph, Wolfram W. Gunzer, Florian Coldewey, Sina M. Riedel, Thomas Schröttner, Percy Microorganisms Article Recent publications indicate that A. radioresistens can cause infections in humans, even though it is rarely reported in routine diagnostics. However, the fact that it is infrequently detected may be explained by the misidentification of the species by conventional methods. It is also likely that A. radioresistens is not considered clinically relevant and therefore not consistently included in diagnostic results. To elucidate the medical significance of this probably clinically underestimated bacterial species, we created a well-documented reference strain collection of 21 strains collected in routine diagnostics. For further analysis of A. radioresistens, it is essential to know which methods can be used to achieve a trustworthy identification. We, therefore, compared three methods widely used in routine diagnostics (MALDI-TOF MS, VITEK 2, and sequencing of housekeeping genes) in terms of secure and reliable identification of A. radioresistens. As reference methods, whole genome-based approaches were applied. VITEK 2 led to misidentification for four strains. However, MALDI-TOF MS and sequencing of housekeeping genes led to reliable and robust identifications. MDPI 2022-08-31 /pmc/articles/PMC9503985/ /pubmed/36144369 http://dx.doi.org/10.3390/microorganisms10091767 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Bigge, Richard
Bunk, Boyke
Rudolph, Wolfram W.
Gunzer, Florian
Coldewey, Sina M.
Riedel, Thomas
Schröttner, Percy
Comparative Study of Different Diagnostic Routine Methods for the Identification of Acinetobacter radioresistens
title Comparative Study of Different Diagnostic Routine Methods for the Identification of Acinetobacter radioresistens
title_full Comparative Study of Different Diagnostic Routine Methods for the Identification of Acinetobacter radioresistens
title_fullStr Comparative Study of Different Diagnostic Routine Methods for the Identification of Acinetobacter radioresistens
title_full_unstemmed Comparative Study of Different Diagnostic Routine Methods for the Identification of Acinetobacter radioresistens
title_short Comparative Study of Different Diagnostic Routine Methods for the Identification of Acinetobacter radioresistens
title_sort comparative study of different diagnostic routine methods for the identification of acinetobacter radioresistens
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9503985/
https://www.ncbi.nlm.nih.gov/pubmed/36144369
http://dx.doi.org/10.3390/microorganisms10091767
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