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Investigating the Ability of Growth Models to Predict In Situ Vibrio spp. Abundances
Vibrio spp. have an important role in biogeochemical cycles; some species are disease agents for aquatic animals and/or humans. Predicting population dynamics of Vibrio spp. in natural environments is crucial to predicting how the future conditions will affect the dynamics of these bacteria. The maj...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9505244/ https://www.ncbi.nlm.nih.gov/pubmed/36144366 http://dx.doi.org/10.3390/microorganisms10091765 |
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author | Purgar, Marija Kapetanović, Damir Geček, Sunčana Marn, Nina Haberle, Ines Hackenberger, Branimir K. Gavrilović, Ana Pečar Ilić, Jadranka Hackenberger, Domagoj K. Djerdj, Tamara Ćaleta, Bruno Klanjscek, Tin |
author_facet | Purgar, Marija Kapetanović, Damir Geček, Sunčana Marn, Nina Haberle, Ines Hackenberger, Branimir K. Gavrilović, Ana Pečar Ilić, Jadranka Hackenberger, Domagoj K. Djerdj, Tamara Ćaleta, Bruno Klanjscek, Tin |
author_sort | Purgar, Marija |
collection | PubMed |
description | Vibrio spp. have an important role in biogeochemical cycles; some species are disease agents for aquatic animals and/or humans. Predicting population dynamics of Vibrio spp. in natural environments is crucial to predicting how the future conditions will affect the dynamics of these bacteria. The majority of existing Vibrio spp. population growth models were developed in controlled environments, and their applicability to natural environments is unknown. We collected all available functional models from the literature, and distilled them into 28 variants using unified nomenclature. Next, we assessed their ability to predict Vibrio spp. abundance using two new and five already published longitudinal datasets on Vibrio abundance in four different habitat types. Results demonstrate that, while the models were able to predict Vibrio spp. abundance to an extent, the predictions were not reliable. Models often underperformed, especially in environments under significant anthropogenic influence such as aquaculture and urban coastal habitats. We discuss implications and limitations of our analysis, and suggest research priorities; in particular, we advocate for measuring and modeling organic matter. |
format | Online Article Text |
id | pubmed-9505244 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-95052442022-09-24 Investigating the Ability of Growth Models to Predict In Situ Vibrio spp. Abundances Purgar, Marija Kapetanović, Damir Geček, Sunčana Marn, Nina Haberle, Ines Hackenberger, Branimir K. Gavrilović, Ana Pečar Ilić, Jadranka Hackenberger, Domagoj K. Djerdj, Tamara Ćaleta, Bruno Klanjscek, Tin Microorganisms Article Vibrio spp. have an important role in biogeochemical cycles; some species are disease agents for aquatic animals and/or humans. Predicting population dynamics of Vibrio spp. in natural environments is crucial to predicting how the future conditions will affect the dynamics of these bacteria. The majority of existing Vibrio spp. population growth models were developed in controlled environments, and their applicability to natural environments is unknown. We collected all available functional models from the literature, and distilled them into 28 variants using unified nomenclature. Next, we assessed their ability to predict Vibrio spp. abundance using two new and five already published longitudinal datasets on Vibrio abundance in four different habitat types. Results demonstrate that, while the models were able to predict Vibrio spp. abundance to an extent, the predictions were not reliable. Models often underperformed, especially in environments under significant anthropogenic influence such as aquaculture and urban coastal habitats. We discuss implications and limitations of our analysis, and suggest research priorities; in particular, we advocate for measuring and modeling organic matter. MDPI 2022-08-31 /pmc/articles/PMC9505244/ /pubmed/36144366 http://dx.doi.org/10.3390/microorganisms10091765 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Purgar, Marija Kapetanović, Damir Geček, Sunčana Marn, Nina Haberle, Ines Hackenberger, Branimir K. Gavrilović, Ana Pečar Ilić, Jadranka Hackenberger, Domagoj K. Djerdj, Tamara Ćaleta, Bruno Klanjscek, Tin Investigating the Ability of Growth Models to Predict In Situ Vibrio spp. Abundances |
title | Investigating the Ability of Growth Models to Predict In Situ Vibrio spp. Abundances |
title_full | Investigating the Ability of Growth Models to Predict In Situ Vibrio spp. Abundances |
title_fullStr | Investigating the Ability of Growth Models to Predict In Situ Vibrio spp. Abundances |
title_full_unstemmed | Investigating the Ability of Growth Models to Predict In Situ Vibrio spp. Abundances |
title_short | Investigating the Ability of Growth Models to Predict In Situ Vibrio spp. Abundances |
title_sort | investigating the ability of growth models to predict in situ vibrio spp. abundances |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9505244/ https://www.ncbi.nlm.nih.gov/pubmed/36144366 http://dx.doi.org/10.3390/microorganisms10091765 |
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