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Investigating the Ability of Growth Models to Predict In Situ Vibrio spp. Abundances

Vibrio spp. have an important role in biogeochemical cycles; some species are disease agents for aquatic animals and/or humans. Predicting population dynamics of Vibrio spp. in natural environments is crucial to predicting how the future conditions will affect the dynamics of these bacteria. The maj...

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Autores principales: Purgar, Marija, Kapetanović, Damir, Geček, Sunčana, Marn, Nina, Haberle, Ines, Hackenberger, Branimir K., Gavrilović, Ana, Pečar Ilić, Jadranka, Hackenberger, Domagoj K., Djerdj, Tamara, Ćaleta, Bruno, Klanjscek, Tin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9505244/
https://www.ncbi.nlm.nih.gov/pubmed/36144366
http://dx.doi.org/10.3390/microorganisms10091765
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author Purgar, Marija
Kapetanović, Damir
Geček, Sunčana
Marn, Nina
Haberle, Ines
Hackenberger, Branimir K.
Gavrilović, Ana
Pečar Ilić, Jadranka
Hackenberger, Domagoj K.
Djerdj, Tamara
Ćaleta, Bruno
Klanjscek, Tin
author_facet Purgar, Marija
Kapetanović, Damir
Geček, Sunčana
Marn, Nina
Haberle, Ines
Hackenberger, Branimir K.
Gavrilović, Ana
Pečar Ilić, Jadranka
Hackenberger, Domagoj K.
Djerdj, Tamara
Ćaleta, Bruno
Klanjscek, Tin
author_sort Purgar, Marija
collection PubMed
description Vibrio spp. have an important role in biogeochemical cycles; some species are disease agents for aquatic animals and/or humans. Predicting population dynamics of Vibrio spp. in natural environments is crucial to predicting how the future conditions will affect the dynamics of these bacteria. The majority of existing Vibrio spp. population growth models were developed in controlled environments, and their applicability to natural environments is unknown. We collected all available functional models from the literature, and distilled them into 28 variants using unified nomenclature. Next, we assessed their ability to predict Vibrio spp. abundance using two new and five already published longitudinal datasets on Vibrio abundance in four different habitat types. Results demonstrate that, while the models were able to predict Vibrio spp. abundance to an extent, the predictions were not reliable. Models often underperformed, especially in environments under significant anthropogenic influence such as aquaculture and urban coastal habitats. We discuss implications and limitations of our analysis, and suggest research priorities; in particular, we advocate for measuring and modeling organic matter.
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spelling pubmed-95052442022-09-24 Investigating the Ability of Growth Models to Predict In Situ Vibrio spp. Abundances Purgar, Marija Kapetanović, Damir Geček, Sunčana Marn, Nina Haberle, Ines Hackenberger, Branimir K. Gavrilović, Ana Pečar Ilić, Jadranka Hackenberger, Domagoj K. Djerdj, Tamara Ćaleta, Bruno Klanjscek, Tin Microorganisms Article Vibrio spp. have an important role in biogeochemical cycles; some species are disease agents for aquatic animals and/or humans. Predicting population dynamics of Vibrio spp. in natural environments is crucial to predicting how the future conditions will affect the dynamics of these bacteria. The majority of existing Vibrio spp. population growth models were developed in controlled environments, and their applicability to natural environments is unknown. We collected all available functional models from the literature, and distilled them into 28 variants using unified nomenclature. Next, we assessed their ability to predict Vibrio spp. abundance using two new and five already published longitudinal datasets on Vibrio abundance in four different habitat types. Results demonstrate that, while the models were able to predict Vibrio spp. abundance to an extent, the predictions were not reliable. Models often underperformed, especially in environments under significant anthropogenic influence such as aquaculture and urban coastal habitats. We discuss implications and limitations of our analysis, and suggest research priorities; in particular, we advocate for measuring and modeling organic matter. MDPI 2022-08-31 /pmc/articles/PMC9505244/ /pubmed/36144366 http://dx.doi.org/10.3390/microorganisms10091765 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Purgar, Marija
Kapetanović, Damir
Geček, Sunčana
Marn, Nina
Haberle, Ines
Hackenberger, Branimir K.
Gavrilović, Ana
Pečar Ilić, Jadranka
Hackenberger, Domagoj K.
Djerdj, Tamara
Ćaleta, Bruno
Klanjscek, Tin
Investigating the Ability of Growth Models to Predict In Situ Vibrio spp. Abundances
title Investigating the Ability of Growth Models to Predict In Situ Vibrio spp. Abundances
title_full Investigating the Ability of Growth Models to Predict In Situ Vibrio spp. Abundances
title_fullStr Investigating the Ability of Growth Models to Predict In Situ Vibrio spp. Abundances
title_full_unstemmed Investigating the Ability of Growth Models to Predict In Situ Vibrio spp. Abundances
title_short Investigating the Ability of Growth Models to Predict In Situ Vibrio spp. Abundances
title_sort investigating the ability of growth models to predict in situ vibrio spp. abundances
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9505244/
https://www.ncbi.nlm.nih.gov/pubmed/36144366
http://dx.doi.org/10.3390/microorganisms10091765
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