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FathomNet: A global image database for enabling artificial intelligence in the ocean

The ocean is experiencing unprecedented rapid change, and visually monitoring marine biota at the spatiotemporal scales needed for responsible stewardship is a formidable task. As baselines are sought by the research community, the volume and rate of this required data collection rapidly outpaces ou...

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Autores principales: Katija, Kakani, Orenstein, Eric, Schlining, Brian, Lundsten, Lonny, Barnard, Kevin, Sainz, Giovanna, Boulais, Oceane, Cromwell, Megan, Butler, Erin, Woodward, Benjamin, Bell, Katherine L. C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9508077/
https://www.ncbi.nlm.nih.gov/pubmed/36151130
http://dx.doi.org/10.1038/s41598-022-19939-2
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author Katija, Kakani
Orenstein, Eric
Schlining, Brian
Lundsten, Lonny
Barnard, Kevin
Sainz, Giovanna
Boulais, Oceane
Cromwell, Megan
Butler, Erin
Woodward, Benjamin
Bell, Katherine L. C.
author_facet Katija, Kakani
Orenstein, Eric
Schlining, Brian
Lundsten, Lonny
Barnard, Kevin
Sainz, Giovanna
Boulais, Oceane
Cromwell, Megan
Butler, Erin
Woodward, Benjamin
Bell, Katherine L. C.
author_sort Katija, Kakani
collection PubMed
description The ocean is experiencing unprecedented rapid change, and visually monitoring marine biota at the spatiotemporal scales needed for responsible stewardship is a formidable task. As baselines are sought by the research community, the volume and rate of this required data collection rapidly outpaces our abilities to process and analyze them. Recent advances in machine learning enables fast, sophisticated analysis of visual data, but have had limited success in the ocean due to lack of data standardization, insufficient formatting, and demand for large, labeled datasets. To address this need, we built FathomNet, an open-source image database that standardizes and aggregates expertly curated labeled data. FathomNet has been seeded with existing iconic and non-iconic imagery of marine animals, underwater equipment, debris, and other concepts, and allows for future contributions from distributed data sources. We demonstrate how FathomNet data can be used to train and deploy models on other institutional video to reduce annotation effort, and enable automated tracking of underwater concepts when integrated with robotic vehicles. As FathomNet continues to grow and incorporate more labeled data from the community, we can accelerate the processing of visual data to achieve a healthy and sustainable global ocean.
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spelling pubmed-95080772022-09-25 FathomNet: A global image database for enabling artificial intelligence in the ocean Katija, Kakani Orenstein, Eric Schlining, Brian Lundsten, Lonny Barnard, Kevin Sainz, Giovanna Boulais, Oceane Cromwell, Megan Butler, Erin Woodward, Benjamin Bell, Katherine L. C. Sci Rep Article The ocean is experiencing unprecedented rapid change, and visually monitoring marine biota at the spatiotemporal scales needed for responsible stewardship is a formidable task. As baselines are sought by the research community, the volume and rate of this required data collection rapidly outpaces our abilities to process and analyze them. Recent advances in machine learning enables fast, sophisticated analysis of visual data, but have had limited success in the ocean due to lack of data standardization, insufficient formatting, and demand for large, labeled datasets. To address this need, we built FathomNet, an open-source image database that standardizes and aggregates expertly curated labeled data. FathomNet has been seeded with existing iconic and non-iconic imagery of marine animals, underwater equipment, debris, and other concepts, and allows for future contributions from distributed data sources. We demonstrate how FathomNet data can be used to train and deploy models on other institutional video to reduce annotation effort, and enable automated tracking of underwater concepts when integrated with robotic vehicles. As FathomNet continues to grow and incorporate more labeled data from the community, we can accelerate the processing of visual data to achieve a healthy and sustainable global ocean. Nature Publishing Group UK 2022-09-23 /pmc/articles/PMC9508077/ /pubmed/36151130 http://dx.doi.org/10.1038/s41598-022-19939-2 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Katija, Kakani
Orenstein, Eric
Schlining, Brian
Lundsten, Lonny
Barnard, Kevin
Sainz, Giovanna
Boulais, Oceane
Cromwell, Megan
Butler, Erin
Woodward, Benjamin
Bell, Katherine L. C.
FathomNet: A global image database for enabling artificial intelligence in the ocean
title FathomNet: A global image database for enabling artificial intelligence in the ocean
title_full FathomNet: A global image database for enabling artificial intelligence in the ocean
title_fullStr FathomNet: A global image database for enabling artificial intelligence in the ocean
title_full_unstemmed FathomNet: A global image database for enabling artificial intelligence in the ocean
title_short FathomNet: A global image database for enabling artificial intelligence in the ocean
title_sort fathomnet: a global image database for enabling artificial intelligence in the ocean
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9508077/
https://www.ncbi.nlm.nih.gov/pubmed/36151130
http://dx.doi.org/10.1038/s41598-022-19939-2
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