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Activation of stably silenced genes by recruitment of a synthetic de-methylating module

Stably silenced genes that display a high level of CpG dinucleotide methylation are refractory to the current generation of dCas9-based activation systems. To counter this, we create an improved activation system by coupling the catalytic domain of DNA demethylating enzyme TET1 with transcriptional...

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Autores principales: Chan, Wing Fuk, Coughlan, Hannah D., Chen, Yunshun, Keenan, Christine R., Smyth, Gordon K., Perkins, Andrew C., Johanson, Timothy M., Allan, Rhys S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9508233/
https://www.ncbi.nlm.nih.gov/pubmed/36151095
http://dx.doi.org/10.1038/s41467-022-33181-4
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author Chan, Wing Fuk
Coughlan, Hannah D.
Chen, Yunshun
Keenan, Christine R.
Smyth, Gordon K.
Perkins, Andrew C.
Johanson, Timothy M.
Allan, Rhys S.
author_facet Chan, Wing Fuk
Coughlan, Hannah D.
Chen, Yunshun
Keenan, Christine R.
Smyth, Gordon K.
Perkins, Andrew C.
Johanson, Timothy M.
Allan, Rhys S.
author_sort Chan, Wing Fuk
collection PubMed
description Stably silenced genes that display a high level of CpG dinucleotide methylation are refractory to the current generation of dCas9-based activation systems. To counter this, we create an improved activation system by coupling the catalytic domain of DNA demethylating enzyme TET1 with transcriptional activators (TETact). We show that TETact demethylation-coupled activation is able to induce transcription of suppressed genes, both individually and simultaneously in cells, and has utility across a number of cell types. Furthermore, we show that TETact can effectively reactivate embryonic haemoglobin genes in non-erythroid cells. We anticipate that TETact will expand the existing CRISPR toolbox and be valuable for functional studies, genetic screens and potential therapeutics.
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spelling pubmed-95082332022-09-25 Activation of stably silenced genes by recruitment of a synthetic de-methylating module Chan, Wing Fuk Coughlan, Hannah D. Chen, Yunshun Keenan, Christine R. Smyth, Gordon K. Perkins, Andrew C. Johanson, Timothy M. Allan, Rhys S. Nat Commun Article Stably silenced genes that display a high level of CpG dinucleotide methylation are refractory to the current generation of dCas9-based activation systems. To counter this, we create an improved activation system by coupling the catalytic domain of DNA demethylating enzyme TET1 with transcriptional activators (TETact). We show that TETact demethylation-coupled activation is able to induce transcription of suppressed genes, both individually and simultaneously in cells, and has utility across a number of cell types. Furthermore, we show that TETact can effectively reactivate embryonic haemoglobin genes in non-erythroid cells. We anticipate that TETact will expand the existing CRISPR toolbox and be valuable for functional studies, genetic screens and potential therapeutics. Nature Publishing Group UK 2022-09-23 /pmc/articles/PMC9508233/ /pubmed/36151095 http://dx.doi.org/10.1038/s41467-022-33181-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Chan, Wing Fuk
Coughlan, Hannah D.
Chen, Yunshun
Keenan, Christine R.
Smyth, Gordon K.
Perkins, Andrew C.
Johanson, Timothy M.
Allan, Rhys S.
Activation of stably silenced genes by recruitment of a synthetic de-methylating module
title Activation of stably silenced genes by recruitment of a synthetic de-methylating module
title_full Activation of stably silenced genes by recruitment of a synthetic de-methylating module
title_fullStr Activation of stably silenced genes by recruitment of a synthetic de-methylating module
title_full_unstemmed Activation of stably silenced genes by recruitment of a synthetic de-methylating module
title_short Activation of stably silenced genes by recruitment of a synthetic de-methylating module
title_sort activation of stably silenced genes by recruitment of a synthetic de-methylating module
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9508233/
https://www.ncbi.nlm.nih.gov/pubmed/36151095
http://dx.doi.org/10.1038/s41467-022-33181-4
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