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Rethinking the complexity and uncertainty of spatial networks applied to forest ecology

Characterizing tree spatial patterns and interactions are helpful to reveal underlying processes assembling forest communities. Spatial networks, despite their complexity, are powerful to examine spatial interactions at an individual level using well-defined patterns. However, complex forestation ne...

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Autores principales: Wu, Hao-Ran, Peng, Chen, Chen, Ming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9508254/
https://www.ncbi.nlm.nih.gov/pubmed/36151102
http://dx.doi.org/10.1038/s41598-022-16485-9
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author Wu, Hao-Ran
Peng, Chen
Chen, Ming
author_facet Wu, Hao-Ran
Peng, Chen
Chen, Ming
author_sort Wu, Hao-Ran
collection PubMed
description Characterizing tree spatial patterns and interactions are helpful to reveal underlying processes assembling forest communities. Spatial networks, despite their complexity, are powerful to examine spatial interactions at an individual level using well-defined patterns. However, complex forestation networks introduce uncertainties. Validation methods are needed to assess whether network-based metrics can identify different processes. Here, we constructed three types of networks, which reflect various aspects of tree competition. Based on five spatial null models and 199 Monte-Carlo simulations, we were able to select network-based metrics that exhibited well performance in distinguishing different processes. This technique was then applied to a tropical forest dataset in Costa Rica. We found that the average node degree and the clustering coefficient are good metrics like the paired correlation function. In addition, the network approach can identify fine-scale spatial variations of tree competition and its underlying causes. Our analyzes also indicate that a bit of caution is needed when defining the network structure as well as designing network-based metrics. We suggested that validation techniques using corresponding spatial null models are critically important to reduce the negative effects caused by uncertainties of the network.
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spelling pubmed-95082542022-09-25 Rethinking the complexity and uncertainty of spatial networks applied to forest ecology Wu, Hao-Ran Peng, Chen Chen, Ming Sci Rep Article Characterizing tree spatial patterns and interactions are helpful to reveal underlying processes assembling forest communities. Spatial networks, despite their complexity, are powerful to examine spatial interactions at an individual level using well-defined patterns. However, complex forestation networks introduce uncertainties. Validation methods are needed to assess whether network-based metrics can identify different processes. Here, we constructed three types of networks, which reflect various aspects of tree competition. Based on five spatial null models and 199 Monte-Carlo simulations, we were able to select network-based metrics that exhibited well performance in distinguishing different processes. This technique was then applied to a tropical forest dataset in Costa Rica. We found that the average node degree and the clustering coefficient are good metrics like the paired correlation function. In addition, the network approach can identify fine-scale spatial variations of tree competition and its underlying causes. Our analyzes also indicate that a bit of caution is needed when defining the network structure as well as designing network-based metrics. We suggested that validation techniques using corresponding spatial null models are critically important to reduce the negative effects caused by uncertainties of the network. Nature Publishing Group UK 2022-09-23 /pmc/articles/PMC9508254/ /pubmed/36151102 http://dx.doi.org/10.1038/s41598-022-16485-9 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Wu, Hao-Ran
Peng, Chen
Chen, Ming
Rethinking the complexity and uncertainty of spatial networks applied to forest ecology
title Rethinking the complexity and uncertainty of spatial networks applied to forest ecology
title_full Rethinking the complexity and uncertainty of spatial networks applied to forest ecology
title_fullStr Rethinking the complexity and uncertainty of spatial networks applied to forest ecology
title_full_unstemmed Rethinking the complexity and uncertainty of spatial networks applied to forest ecology
title_short Rethinking the complexity and uncertainty of spatial networks applied to forest ecology
title_sort rethinking the complexity and uncertainty of spatial networks applied to forest ecology
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9508254/
https://www.ncbi.nlm.nih.gov/pubmed/36151102
http://dx.doi.org/10.1038/s41598-022-16485-9
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