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Bioinformatics algorithm for lung adenocarcinoma based on macropinocytosis-related long noncoding RNAs as a reliable indicator for predicting survival outcomes and selecting suitable anti-tumor drugs

As a highly conserved endocytic mechanism during evolution, macropinocytosis is enhanced in several malignant tumors, which promotes tumor growth by ingesting extracellular nutrients. Recent research has emphasized the crucial role of macropinocytosis in tumor immunity. In the present study, we esta...

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Autores principales: Chen, Hang, Xu, Shuguang, Hu, Zeyang, Wei, Yiqing, Zhu, Youjie, Fang, Shenzhe, Pan, Qiaoling, Liu, Kaitai, Li, Ni, Zhu, Linwen, Xu, Guodong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9509037/
https://www.ncbi.nlm.nih.gov/pubmed/36197217
http://dx.doi.org/10.1097/MD.0000000000030543
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author Chen, Hang
Xu, Shuguang
Hu, Zeyang
Wei, Yiqing
Zhu, Youjie
Fang, Shenzhe
Pan, Qiaoling
Liu, Kaitai
Li, Ni
Zhu, Linwen
Xu, Guodong
author_facet Chen, Hang
Xu, Shuguang
Hu, Zeyang
Wei, Yiqing
Zhu, Youjie
Fang, Shenzhe
Pan, Qiaoling
Liu, Kaitai
Li, Ni
Zhu, Linwen
Xu, Guodong
author_sort Chen, Hang
collection PubMed
description As a highly conserved endocytic mechanism during evolution, macropinocytosis is enhanced in several malignant tumors, which promotes tumor growth by ingesting extracellular nutrients. Recent research has emphasized the crucial role of macropinocytosis in tumor immunity. In the present study, we established a new macropinocytosis-related algorithm comprising molecular subtypes and a prognostic signature, in which patients with lung adenocarcinoma (LUAD) were classified into different clusters and risk groups based on the expression of 16 macropinocytosis-related long noncoding RNAs. According to the molecular subtypes, we discovered that patients with LUAD in cluster1 had a higher content of stromal cells and immune cells, stronger intensity of immune activities, higher expression of PD1, PDL1, and HAVCR2, and a higher tumor mutational burden, while patients in cluster2 exhibited better survival advantages. Furthermore, the constructed prognostic signature revealed that low-risk patients showed better survival outcomes, earlier tumor stage, higher abundance of stromal cells and immune cells, higher immune activities, higher expression of PD1, PDL1, CTLA4, and HAVCR2, and more sensitivity to Paclitaxel and Erlotinib. By contrast, patients with high scores were more suitable for Gefitinib treatment. In conclusion, the novel algorithm that divided patients with LUAD into different groups according to their clusters and risk groups, which could provide theoretical support for predicting their survival outcomes and selecting drugs for chemotherapy, targeted therapy, and immunotherapy.
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spelling pubmed-95090372022-09-26 Bioinformatics algorithm for lung adenocarcinoma based on macropinocytosis-related long noncoding RNAs as a reliable indicator for predicting survival outcomes and selecting suitable anti-tumor drugs Chen, Hang Xu, Shuguang Hu, Zeyang Wei, Yiqing Zhu, Youjie Fang, Shenzhe Pan, Qiaoling Liu, Kaitai Li, Ni Zhu, Linwen Xu, Guodong Medicine (Baltimore) Research Article As a highly conserved endocytic mechanism during evolution, macropinocytosis is enhanced in several malignant tumors, which promotes tumor growth by ingesting extracellular nutrients. Recent research has emphasized the crucial role of macropinocytosis in tumor immunity. In the present study, we established a new macropinocytosis-related algorithm comprising molecular subtypes and a prognostic signature, in which patients with lung adenocarcinoma (LUAD) were classified into different clusters and risk groups based on the expression of 16 macropinocytosis-related long noncoding RNAs. According to the molecular subtypes, we discovered that patients with LUAD in cluster1 had a higher content of stromal cells and immune cells, stronger intensity of immune activities, higher expression of PD1, PDL1, and HAVCR2, and a higher tumor mutational burden, while patients in cluster2 exhibited better survival advantages. Furthermore, the constructed prognostic signature revealed that low-risk patients showed better survival outcomes, earlier tumor stage, higher abundance of stromal cells and immune cells, higher immune activities, higher expression of PD1, PDL1, CTLA4, and HAVCR2, and more sensitivity to Paclitaxel and Erlotinib. By contrast, patients with high scores were more suitable for Gefitinib treatment. In conclusion, the novel algorithm that divided patients with LUAD into different groups according to their clusters and risk groups, which could provide theoretical support for predicting their survival outcomes and selecting drugs for chemotherapy, targeted therapy, and immunotherapy. Lippincott Williams & Wilkins 2022-09-23 /pmc/articles/PMC9509037/ /pubmed/36197217 http://dx.doi.org/10.1097/MD.0000000000030543 Text en Copyright © 2022 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial License 4.0 (CCBY-NC) (https://creativecommons.org/licenses/by-nc/4.0/) , where it is permissible to download, share, remix, transform, and buildup the work provided it is properly cited. The work cannot be used commercially without permission from the journal.
spellingShingle Research Article
Chen, Hang
Xu, Shuguang
Hu, Zeyang
Wei, Yiqing
Zhu, Youjie
Fang, Shenzhe
Pan, Qiaoling
Liu, Kaitai
Li, Ni
Zhu, Linwen
Xu, Guodong
Bioinformatics algorithm for lung adenocarcinoma based on macropinocytosis-related long noncoding RNAs as a reliable indicator for predicting survival outcomes and selecting suitable anti-tumor drugs
title Bioinformatics algorithm for lung adenocarcinoma based on macropinocytosis-related long noncoding RNAs as a reliable indicator for predicting survival outcomes and selecting suitable anti-tumor drugs
title_full Bioinformatics algorithm for lung adenocarcinoma based on macropinocytosis-related long noncoding RNAs as a reliable indicator for predicting survival outcomes and selecting suitable anti-tumor drugs
title_fullStr Bioinformatics algorithm for lung adenocarcinoma based on macropinocytosis-related long noncoding RNAs as a reliable indicator for predicting survival outcomes and selecting suitable anti-tumor drugs
title_full_unstemmed Bioinformatics algorithm for lung adenocarcinoma based on macropinocytosis-related long noncoding RNAs as a reliable indicator for predicting survival outcomes and selecting suitable anti-tumor drugs
title_short Bioinformatics algorithm for lung adenocarcinoma based on macropinocytosis-related long noncoding RNAs as a reliable indicator for predicting survival outcomes and selecting suitable anti-tumor drugs
title_sort bioinformatics algorithm for lung adenocarcinoma based on macropinocytosis-related long noncoding rnas as a reliable indicator for predicting survival outcomes and selecting suitable anti-tumor drugs
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9509037/
https://www.ncbi.nlm.nih.gov/pubmed/36197217
http://dx.doi.org/10.1097/MD.0000000000030543
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