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P372 Deciphering transcript isoform switching and utilization in mature biofilm of Candida glabrata through a global transcriptomic approach

POSTER SESSION 3, SEPTEMBER 23, 2022, 12:30 PM - 1:30 PM:   OBJECTIVE: Eukaryotic cellular systems utilize alternative transcript isoforms generated via an isoform switching mechanism to thwart various stress conditions. To the best of our knowledge, transcript isoform switching and differential tra...

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Autor principal: Raj, Khem
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9509978/
http://dx.doi.org/10.1093/mmy/myac072.P372
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author Raj, Khem
author_facet Raj, Khem
author_sort Raj, Khem
collection PubMed
description POSTER SESSION 3, SEPTEMBER 23, 2022, 12:30 PM - 1:30 PM:   OBJECTIVE: Eukaryotic cellular systems utilize alternative transcript isoforms generated via an isoform switching mechanism to thwart various stress conditions. To the best of our knowledge, transcript isoform switching and differential transcript isoform usage (DTU) in Candida glabrata have not been studied. Therefore, the present study was designed to delineate differential transcript isoform expression (DTE) and transcript isoform switching followed by DTU and the functional impact of transcripts in a mature biofilm of C. glabrata (clinical isolate; NCCPF 100037) through an RNA sequencing approach. RESULTS: DTE analysis generated 7837 transcript isoforms from the C. glabrata genome (5293 genes in total), and DTU investigations revealed that transcript isoforms of 292 genes were specifically utilized in the formation of mature biofilms via the isoform switching process. Gene Ontology/pathway analysis and protein-protein interactions further substantiated the functional attributes of switched transcript isoforms selectively used by C. glabrata in biofilm formation and survival. CONCLUSION: The present study elucidates that specific transcript isoforms utilized in mature biofilms of C. glabrata could be used as potential targets for the development of novel antifungal therapeutics.
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spelling pubmed-95099782022-09-26 P372 Deciphering transcript isoform switching and utilization in mature biofilm of Candida glabrata through a global transcriptomic approach Raj, Khem Med Mycol Oral Presentations POSTER SESSION 3, SEPTEMBER 23, 2022, 12:30 PM - 1:30 PM:   OBJECTIVE: Eukaryotic cellular systems utilize alternative transcript isoforms generated via an isoform switching mechanism to thwart various stress conditions. To the best of our knowledge, transcript isoform switching and differential transcript isoform usage (DTU) in Candida glabrata have not been studied. Therefore, the present study was designed to delineate differential transcript isoform expression (DTE) and transcript isoform switching followed by DTU and the functional impact of transcripts in a mature biofilm of C. glabrata (clinical isolate; NCCPF 100037) through an RNA sequencing approach. RESULTS: DTE analysis generated 7837 transcript isoforms from the C. glabrata genome (5293 genes in total), and DTU investigations revealed that transcript isoforms of 292 genes were specifically utilized in the formation of mature biofilms via the isoform switching process. Gene Ontology/pathway analysis and protein-protein interactions further substantiated the functional attributes of switched transcript isoforms selectively used by C. glabrata in biofilm formation and survival. CONCLUSION: The present study elucidates that specific transcript isoforms utilized in mature biofilms of C. glabrata could be used as potential targets for the development of novel antifungal therapeutics. Oxford University Press 2022-09-20 /pmc/articles/PMC9509978/ http://dx.doi.org/10.1093/mmy/myac072.P372 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of The International Society for Human and Animal Mycology. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (https://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Oral Presentations
Raj, Khem
P372 Deciphering transcript isoform switching and utilization in mature biofilm of Candida glabrata through a global transcriptomic approach
title P372 Deciphering transcript isoform switching and utilization in mature biofilm of Candida glabrata through a global transcriptomic approach
title_full P372 Deciphering transcript isoform switching and utilization in mature biofilm of Candida glabrata through a global transcriptomic approach
title_fullStr P372 Deciphering transcript isoform switching and utilization in mature biofilm of Candida glabrata through a global transcriptomic approach
title_full_unstemmed P372 Deciphering transcript isoform switching and utilization in mature biofilm of Candida glabrata through a global transcriptomic approach
title_short P372 Deciphering transcript isoform switching and utilization in mature biofilm of Candida glabrata through a global transcriptomic approach
title_sort p372 deciphering transcript isoform switching and utilization in mature biofilm of candida glabrata through a global transcriptomic approach
topic Oral Presentations
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9509978/
http://dx.doi.org/10.1093/mmy/myac072.P372
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