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Deinococcus taeanensis sp. nov., a Radiation-Resistant Bacterium Isolated from a Coastal Dune
A Gram-stain-negative, nonspore-forming, nonmotile, aerobic, rod-shaped, and very pale orange-colored bacterial strain, designated TS293(T), was isolated from a sand sample obtained from a coastal dune after exposure to 3kGy of gamma (γ)-radiation. Phylogenetic analysis based on the 16S rRNA gene se...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9510100/ https://www.ncbi.nlm.nih.gov/pubmed/36161362 http://dx.doi.org/10.1007/s00284-022-03044-8 |
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author | Lee, Ji Hee Jung, Jong-Hyun Kim, Min-Kyu Lim, Sangyong |
author_facet | Lee, Ji Hee Jung, Jong-Hyun Kim, Min-Kyu Lim, Sangyong |
author_sort | Lee, Ji Hee |
collection | PubMed |
description | A Gram-stain-negative, nonspore-forming, nonmotile, aerobic, rod-shaped, and very pale orange-colored bacterial strain, designated TS293(T), was isolated from a sand sample obtained from a coastal dune after exposure to 3kGy of gamma (γ)-radiation. Phylogenetic analysis based on the 16S rRNA gene sequences revealed that the isolate was a member of the genus Deinococcus and clustered with D. deserti VCD115(T). The genome of strain TS293(T) was 4.62 Mbp long (68.2% G + C content and 4124 predicted genes) divided into a 2.86Mb main chromosome and five plasmids. Many genes considered to be important to the γ-radiation and oxidative stress resistance of Deinococcus were conserved in TS293(T), but genome features that could differentiate TS293(T) from D. deserti and D. radiodurans, the type species of the Deinococcus genus, were also detected. Strain TS293(T) showed resistance to γ-radiation with D(10) values (i.e., the dose required to reduce the bacterial population by tenfold) of 3.1kGy. The predominant fatty acids of strain TS293(T) were summed feature 3 (C(16:1) ω6c and/or C(16:1) ω7c) and iso-C(16:0). The major polar lipids were two unidentified phosphoglycolipids and one unidentified glycolipid. The main respiratory quinone was menaquinone-8. Based on the phylogenetic, genomic, physiological, and chemotaxonomic characteristics, strain TS293(T) represents a novel species, for which the name Deinococcus taeanensis sp. nov. is proposed. The type strain is TS293(T) (= KCTC 43191(T) = JCM 34027(T)). SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00284-022-03044-8. |
format | Online Article Text |
id | pubmed-9510100 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-95101002022-09-27 Deinococcus taeanensis sp. nov., a Radiation-Resistant Bacterium Isolated from a Coastal Dune Lee, Ji Hee Jung, Jong-Hyun Kim, Min-Kyu Lim, Sangyong Curr Microbiol Article A Gram-stain-negative, nonspore-forming, nonmotile, aerobic, rod-shaped, and very pale orange-colored bacterial strain, designated TS293(T), was isolated from a sand sample obtained from a coastal dune after exposure to 3kGy of gamma (γ)-radiation. Phylogenetic analysis based on the 16S rRNA gene sequences revealed that the isolate was a member of the genus Deinococcus and clustered with D. deserti VCD115(T). The genome of strain TS293(T) was 4.62 Mbp long (68.2% G + C content and 4124 predicted genes) divided into a 2.86Mb main chromosome and five plasmids. Many genes considered to be important to the γ-radiation and oxidative stress resistance of Deinococcus were conserved in TS293(T), but genome features that could differentiate TS293(T) from D. deserti and D. radiodurans, the type species of the Deinococcus genus, were also detected. Strain TS293(T) showed resistance to γ-radiation with D(10) values (i.e., the dose required to reduce the bacterial population by tenfold) of 3.1kGy. The predominant fatty acids of strain TS293(T) were summed feature 3 (C(16:1) ω6c and/or C(16:1) ω7c) and iso-C(16:0). The major polar lipids were two unidentified phosphoglycolipids and one unidentified glycolipid. The main respiratory quinone was menaquinone-8. Based on the phylogenetic, genomic, physiological, and chemotaxonomic characteristics, strain TS293(T) represents a novel species, for which the name Deinococcus taeanensis sp. nov. is proposed. The type strain is TS293(T) (= KCTC 43191(T) = JCM 34027(T)). SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00284-022-03044-8. Springer US 2022-09-25 2022 /pmc/articles/PMC9510100/ /pubmed/36161362 http://dx.doi.org/10.1007/s00284-022-03044-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Lee, Ji Hee Jung, Jong-Hyun Kim, Min-Kyu Lim, Sangyong Deinococcus taeanensis sp. nov., a Radiation-Resistant Bacterium Isolated from a Coastal Dune |
title | Deinococcus taeanensis sp. nov., a Radiation-Resistant Bacterium Isolated from a Coastal Dune |
title_full | Deinococcus taeanensis sp. nov., a Radiation-Resistant Bacterium Isolated from a Coastal Dune |
title_fullStr | Deinococcus taeanensis sp. nov., a Radiation-Resistant Bacterium Isolated from a Coastal Dune |
title_full_unstemmed | Deinococcus taeanensis sp. nov., a Radiation-Resistant Bacterium Isolated from a Coastal Dune |
title_short | Deinococcus taeanensis sp. nov., a Radiation-Resistant Bacterium Isolated from a Coastal Dune |
title_sort | deinococcus taeanensis sp. nov., a radiation-resistant bacterium isolated from a coastal dune |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9510100/ https://www.ncbi.nlm.nih.gov/pubmed/36161362 http://dx.doi.org/10.1007/s00284-022-03044-8 |
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