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Values of OAS gene family in the expression signature, immune cell infiltration and prognosis of human bladder cancer
BACKGROUND: Bladder cancer (BLCA) is one of the most common genitourinary malignancies in the world, but its pathogenic genes have not been fully identified and the treatment outcomes are still unsatisfactory. Although the members of 2', 5'-oligoadenylate synthetase (OAS) gene family are k...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9510761/ https://www.ncbi.nlm.nih.gov/pubmed/36162993 http://dx.doi.org/10.1186/s12885-022-10102-8 |
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author | Gao, Lijuan Ren, Ruimin Shen, Jing Hou, Jiayi Ning, Junya Feng, Yanlin Wang, Meiyue Wu, Lifei Sun, Yaojun Wang, Huang Wang, Deping Cao, Jimin |
author_facet | Gao, Lijuan Ren, Ruimin Shen, Jing Hou, Jiayi Ning, Junya Feng, Yanlin Wang, Meiyue Wu, Lifei Sun, Yaojun Wang, Huang Wang, Deping Cao, Jimin |
author_sort | Gao, Lijuan |
collection | PubMed |
description | BACKGROUND: Bladder cancer (BLCA) is one of the most common genitourinary malignancies in the world, but its pathogenic genes have not been fully identified and the treatment outcomes are still unsatisfactory. Although the members of 2', 5'-oligoadenylate synthetase (OAS) gene family are known involved in some tumorous biological processes, the roles of the OAS gene family in BLCA are still undetermined. METHODS: By combining vast bioinformatic datasets analyses of BLCA and the experimental verification on clinical BLCA specimen, we identified the expressions and biological functions of OAS gene family members in BLCA with comparison to normal bladder tissues. RESULTS: The expression levels of OAS gene family members were higher in BLCA than in normal bladder tissues. The expression levels of most OAS genes had correlations with genomic mutation and methylation, and with the infiltration levels of CD4 + T cells, CD8 + T cells, neutrophils, and dendritic cells in the microenvironment of BLCA. In addition, high expressions of OAS1, OAS2, OAS3, and OASL predicted better overall survival in BLCA patients. CONCLUSIONS: The highly expressed OAS genes in BLCA can reflect immune cells infiltration in the tumor microenvironment and predict the better overall survival of BLCA, and thus may be considered as a signature of BLCA. The study provides new insights into the diagnosis, treatment, and prognosis of BLCA. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12885-022-10102-8. |
format | Online Article Text |
id | pubmed-9510761 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-95107612022-09-26 Values of OAS gene family in the expression signature, immune cell infiltration and prognosis of human bladder cancer Gao, Lijuan Ren, Ruimin Shen, Jing Hou, Jiayi Ning, Junya Feng, Yanlin Wang, Meiyue Wu, Lifei Sun, Yaojun Wang, Huang Wang, Deping Cao, Jimin BMC Cancer Research BACKGROUND: Bladder cancer (BLCA) is one of the most common genitourinary malignancies in the world, but its pathogenic genes have not been fully identified and the treatment outcomes are still unsatisfactory. Although the members of 2', 5'-oligoadenylate synthetase (OAS) gene family are known involved in some tumorous biological processes, the roles of the OAS gene family in BLCA are still undetermined. METHODS: By combining vast bioinformatic datasets analyses of BLCA and the experimental verification on clinical BLCA specimen, we identified the expressions and biological functions of OAS gene family members in BLCA with comparison to normal bladder tissues. RESULTS: The expression levels of OAS gene family members were higher in BLCA than in normal bladder tissues. The expression levels of most OAS genes had correlations with genomic mutation and methylation, and with the infiltration levels of CD4 + T cells, CD8 + T cells, neutrophils, and dendritic cells in the microenvironment of BLCA. In addition, high expressions of OAS1, OAS2, OAS3, and OASL predicted better overall survival in BLCA patients. CONCLUSIONS: The highly expressed OAS genes in BLCA can reflect immune cells infiltration in the tumor microenvironment and predict the better overall survival of BLCA, and thus may be considered as a signature of BLCA. The study provides new insights into the diagnosis, treatment, and prognosis of BLCA. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12885-022-10102-8. BioMed Central 2022-09-26 /pmc/articles/PMC9510761/ /pubmed/36162993 http://dx.doi.org/10.1186/s12885-022-10102-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Gao, Lijuan Ren, Ruimin Shen, Jing Hou, Jiayi Ning, Junya Feng, Yanlin Wang, Meiyue Wu, Lifei Sun, Yaojun Wang, Huang Wang, Deping Cao, Jimin Values of OAS gene family in the expression signature, immune cell infiltration and prognosis of human bladder cancer |
title | Values of OAS gene family in the expression signature, immune cell infiltration and prognosis of human bladder cancer |
title_full | Values of OAS gene family in the expression signature, immune cell infiltration and prognosis of human bladder cancer |
title_fullStr | Values of OAS gene family in the expression signature, immune cell infiltration and prognosis of human bladder cancer |
title_full_unstemmed | Values of OAS gene family in the expression signature, immune cell infiltration and prognosis of human bladder cancer |
title_short | Values of OAS gene family in the expression signature, immune cell infiltration and prognosis of human bladder cancer |
title_sort | values of oas gene family in the expression signature, immune cell infiltration and prognosis of human bladder cancer |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9510761/ https://www.ncbi.nlm.nih.gov/pubmed/36162993 http://dx.doi.org/10.1186/s12885-022-10102-8 |
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