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Development and validation of a novel necroptosis-related score to improve the outcomes of clear cell renal cell carcinoma

Necroptosis has been indicated as a key regulator of tumor progression. However, the prognostic regulatory role of necroptosis in clear cell renal cell carcinoma (ccRCC) needs to be further investigated. In this study, necroptosis-related subtypes were identified by mining the public cohort (n = 530...

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Autores principales: Chen, Ji, Tao, Qiqi, Lang, Zhichao, Jin, Yan, Chen, Guanqi, Li, Xinling, Yu, Zhixian, Li, Yeping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9510770/
https://www.ncbi.nlm.nih.gov/pubmed/36171882
http://dx.doi.org/10.3389/fgene.2022.967613
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author Chen, Ji
Tao, Qiqi
Lang, Zhichao
Jin, Yan
Chen, Guanqi
Li, Xinling
Yu, Zhixian
Li, Yeping
author_facet Chen, Ji
Tao, Qiqi
Lang, Zhichao
Jin, Yan
Chen, Guanqi
Li, Xinling
Yu, Zhixian
Li, Yeping
author_sort Chen, Ji
collection PubMed
description Necroptosis has been indicated as a key regulator of tumor progression. However, the prognostic regulatory role of necroptosis in clear cell renal cell carcinoma (ccRCC) needs to be further investigated. In this study, necroptosis-related subtypes were identified by mining the public cohort (n = 530) obtained from The Cancer Genome Atlas. By applying Principal Component Analysis (PCA), the necroptosis-related scores (N-Score) were developed to assess the prognosis procession of ccRCC. The results were further validated by an external clinical cohort (n = 116) obtained from the First Affiliated Hospital of Wenzhou Medical University. It has been found that N-Score could precisely distinguish the prognostic outcomes of patients as an independent risk factor (Hazard ratio = 4.990, 95% confidence interval (CI) = 2.007–12.403, p < 0.001). In addition, changes in N-Score were associated with differences in tumor mutational burden as well as immune infiltration characterization. Moreover, higher N-Scores were also correlated significantly molecular drug sensitivity and stronger immune checkpoint activity. Notably, the prognosis of ccRCC could be effectively guided by combining the N-Scores and external clinical indicators. In conclusion, N-Scores could be served as a robust and effective biomarker to improve the prognosis outcomes and targeted therapy of ccRCC.
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spelling pubmed-95107702022-09-27 Development and validation of a novel necroptosis-related score to improve the outcomes of clear cell renal cell carcinoma Chen, Ji Tao, Qiqi Lang, Zhichao Jin, Yan Chen, Guanqi Li, Xinling Yu, Zhixian Li, Yeping Front Genet Genetics Necroptosis has been indicated as a key regulator of tumor progression. However, the prognostic regulatory role of necroptosis in clear cell renal cell carcinoma (ccRCC) needs to be further investigated. In this study, necroptosis-related subtypes were identified by mining the public cohort (n = 530) obtained from The Cancer Genome Atlas. By applying Principal Component Analysis (PCA), the necroptosis-related scores (N-Score) were developed to assess the prognosis procession of ccRCC. The results were further validated by an external clinical cohort (n = 116) obtained from the First Affiliated Hospital of Wenzhou Medical University. It has been found that N-Score could precisely distinguish the prognostic outcomes of patients as an independent risk factor (Hazard ratio = 4.990, 95% confidence interval (CI) = 2.007–12.403, p < 0.001). In addition, changes in N-Score were associated with differences in tumor mutational burden as well as immune infiltration characterization. Moreover, higher N-Scores were also correlated significantly molecular drug sensitivity and stronger immune checkpoint activity. Notably, the prognosis of ccRCC could be effectively guided by combining the N-Scores and external clinical indicators. In conclusion, N-Scores could be served as a robust and effective biomarker to improve the prognosis outcomes and targeted therapy of ccRCC. Frontiers Media S.A. 2022-09-12 /pmc/articles/PMC9510770/ /pubmed/36171882 http://dx.doi.org/10.3389/fgene.2022.967613 Text en Copyright © 2022 Chen, Tao, Lang, Jin, Chen, Li, Yu and Li. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Chen, Ji
Tao, Qiqi
Lang, Zhichao
Jin, Yan
Chen, Guanqi
Li, Xinling
Yu, Zhixian
Li, Yeping
Development and validation of a novel necroptosis-related score to improve the outcomes of clear cell renal cell carcinoma
title Development and validation of a novel necroptosis-related score to improve the outcomes of clear cell renal cell carcinoma
title_full Development and validation of a novel necroptosis-related score to improve the outcomes of clear cell renal cell carcinoma
title_fullStr Development and validation of a novel necroptosis-related score to improve the outcomes of clear cell renal cell carcinoma
title_full_unstemmed Development and validation of a novel necroptosis-related score to improve the outcomes of clear cell renal cell carcinoma
title_short Development and validation of a novel necroptosis-related score to improve the outcomes of clear cell renal cell carcinoma
title_sort development and validation of a novel necroptosis-related score to improve the outcomes of clear cell renal cell carcinoma
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9510770/
https://www.ncbi.nlm.nih.gov/pubmed/36171882
http://dx.doi.org/10.3389/fgene.2022.967613
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