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Comprehensive analysis about prognostic and immunological role of WTAP in pan-cancer
Background: Wilms tumor 1-associated protein (WTAP) plays a critical role in ribonucleic acid (RNA) methylation of N6 adenosine (m(6)A) modification, which is closely related with varieties of biological process. However, the role of WTAP in cancers remains to be determined. This study is designed t...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9511574/ https://www.ncbi.nlm.nih.gov/pubmed/36171885 http://dx.doi.org/10.3389/fgene.2022.1007696 |
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author | Lei, Jiangchu Fan, Yuzhi Yan, Chaobiao Jiamaliding, Yeernaer Tang, Yang Zhou, Jiawei Huang, Mengna Ju, Guomin Wu, Jian Peng, Chuanhui |
author_facet | Lei, Jiangchu Fan, Yuzhi Yan, Chaobiao Jiamaliding, Yeernaer Tang, Yang Zhou, Jiawei Huang, Mengna Ju, Guomin Wu, Jian Peng, Chuanhui |
author_sort | Lei, Jiangchu |
collection | PubMed |
description | Background: Wilms tumor 1-associated protein (WTAP) plays a critical role in ribonucleic acid (RNA) methylation of N6 adenosine (m(6)A) modification, which is closely related with varieties of biological process. However, the role of WTAP in cancers remains to be determined. This study is designed to demonstrate the prognostic landscape of WTAP in pan-cancer and explore the relationship between WTAP expression and immune infiltration. Methods: Here, we investigated the expression level and prognostic role of WTAP in pan-cancer using multiple databases, including PrognoScan, GEPIA, and Kaplan-Meier Plotter. Then, applying the GEPIA and TIMER databases, we illustrated the correlations between WTAP expression and immune infiltration in tumors, especially liver hepatocellular carcinoma (LIHC), and esophageal carcinoma (ESCA). Results: WTAP had significant higher expression levels in tumor tissues of ESCA, LIHC, etc., while lower expression levels in those of bladder urothelial carcinoma (BLCA), breast invasive carcinoma (BRCA), etc. And WTAP demonstrated multifaceted prognostic value in cancers. Of our interests, WTAP exerted a harmful effect on LIHC patient for overall survival (OS) and progression free survival (PFS). WTAP expression also significantly associated with the infiltration levels of B cells, CD8(+) T cells, CD4(+) T cells, macrophages, neutrophils, and dendritic cells (DC) in LIHC but not ESCA. Furthermore, combined analysis about WTAP expression level and immune cell specific gene markers implied WTAP correlates with regulatory cells (T reg) infiltration in LIHC and ESCA. Conclusion: The m(6)A regulator WTAP can serve as a prognostic biomarker for certain tumor types in pan-cancer and potentially result from immune cell infiltration. |
format | Online Article Text |
id | pubmed-9511574 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95115742022-09-27 Comprehensive analysis about prognostic and immunological role of WTAP in pan-cancer Lei, Jiangchu Fan, Yuzhi Yan, Chaobiao Jiamaliding, Yeernaer Tang, Yang Zhou, Jiawei Huang, Mengna Ju, Guomin Wu, Jian Peng, Chuanhui Front Genet Genetics Background: Wilms tumor 1-associated protein (WTAP) plays a critical role in ribonucleic acid (RNA) methylation of N6 adenosine (m(6)A) modification, which is closely related with varieties of biological process. However, the role of WTAP in cancers remains to be determined. This study is designed to demonstrate the prognostic landscape of WTAP in pan-cancer and explore the relationship between WTAP expression and immune infiltration. Methods: Here, we investigated the expression level and prognostic role of WTAP in pan-cancer using multiple databases, including PrognoScan, GEPIA, and Kaplan-Meier Plotter. Then, applying the GEPIA and TIMER databases, we illustrated the correlations between WTAP expression and immune infiltration in tumors, especially liver hepatocellular carcinoma (LIHC), and esophageal carcinoma (ESCA). Results: WTAP had significant higher expression levels in tumor tissues of ESCA, LIHC, etc., while lower expression levels in those of bladder urothelial carcinoma (BLCA), breast invasive carcinoma (BRCA), etc. And WTAP demonstrated multifaceted prognostic value in cancers. Of our interests, WTAP exerted a harmful effect on LIHC patient for overall survival (OS) and progression free survival (PFS). WTAP expression also significantly associated with the infiltration levels of B cells, CD8(+) T cells, CD4(+) T cells, macrophages, neutrophils, and dendritic cells (DC) in LIHC but not ESCA. Furthermore, combined analysis about WTAP expression level and immune cell specific gene markers implied WTAP correlates with regulatory cells (T reg) infiltration in LIHC and ESCA. Conclusion: The m(6)A regulator WTAP can serve as a prognostic biomarker for certain tumor types in pan-cancer and potentially result from immune cell infiltration. Frontiers Media S.A. 2022-09-06 /pmc/articles/PMC9511574/ /pubmed/36171885 http://dx.doi.org/10.3389/fgene.2022.1007696 Text en Copyright © 2022 Lei, Fan, Yan, Jiamaliding, Tang, Zhou, Huang, Ju, Wu and Peng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Lei, Jiangchu Fan, Yuzhi Yan, Chaobiao Jiamaliding, Yeernaer Tang, Yang Zhou, Jiawei Huang, Mengna Ju, Guomin Wu, Jian Peng, Chuanhui Comprehensive analysis about prognostic and immunological role of WTAP in pan-cancer |
title | Comprehensive analysis about prognostic and immunological role of WTAP in pan-cancer |
title_full | Comprehensive analysis about prognostic and immunological role of WTAP in pan-cancer |
title_fullStr | Comprehensive analysis about prognostic and immunological role of WTAP in pan-cancer |
title_full_unstemmed | Comprehensive analysis about prognostic and immunological role of WTAP in pan-cancer |
title_short | Comprehensive analysis about prognostic and immunological role of WTAP in pan-cancer |
title_sort | comprehensive analysis about prognostic and immunological role of wtap in pan-cancer |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9511574/ https://www.ncbi.nlm.nih.gov/pubmed/36171885 http://dx.doi.org/10.3389/fgene.2022.1007696 |
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