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Machine learning for contour classification in TG‐263 noncompliant databases
A large volume of medical data are labeled using nonstandardized nomenclature. Although efforts have been made by the American Association of Physicists in Medicine (AAPM) to standardize nomenclature through Task Group 263 (TG‐263), there remain noncompliant databases. This work aims to create an al...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9512347/ https://www.ncbi.nlm.nih.gov/pubmed/35686988 http://dx.doi.org/10.1002/acm2.13662 |
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author | Livermore, David Trappenberg, Thomas Syme, Alasdair |
author_facet | Livermore, David Trappenberg, Thomas Syme, Alasdair |
author_sort | Livermore, David |
collection | PubMed |
description | A large volume of medical data are labeled using nonstandardized nomenclature. Although efforts have been made by the American Association of Physicists in Medicine (AAPM) to standardize nomenclature through Task Group 263 (TG‐263), there remain noncompliant databases. This work aims to create an algorithm that can analyze anatomical contours in patients with head and neck cancer and classify them into TG‐263 compliant nomenclature. To create an accurate algorithm capable of such classification, a combined approaching using both binary images of individual slices of anatomical contours themselves, as well as center of mass coordinates of the structures are input into a neural network. The center of mass coordinates were scaled using two normalization schemes, a simple linear normalization scheme agnostic of the patient anatomy, and an anatomical normalization scheme dependent on patient anatomy. The results of all of the individual slice classifications are then aggregated into a single classification by means of a voting algorithm. The total classification accuracy of the final algorithms was 97.6% mean accuracy per class for nonanatomically normalization scheme, and 97.9% mean accuracy per class for anatomically normalization scheme. The total accuracy was 99.0% (13 errors in 1302 structures) for the nonanatomically normalization scheme, and 98.3% (22 errors in 1302 structures) for the anatomically normalization scheme. |
format | Online Article Text |
id | pubmed-9512347 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95123472022-09-30 Machine learning for contour classification in TG‐263 noncompliant databases Livermore, David Trappenberg, Thomas Syme, Alasdair J Appl Clin Med Phys Radiation Oncology Physics A large volume of medical data are labeled using nonstandardized nomenclature. Although efforts have been made by the American Association of Physicists in Medicine (AAPM) to standardize nomenclature through Task Group 263 (TG‐263), there remain noncompliant databases. This work aims to create an algorithm that can analyze anatomical contours in patients with head and neck cancer and classify them into TG‐263 compliant nomenclature. To create an accurate algorithm capable of such classification, a combined approaching using both binary images of individual slices of anatomical contours themselves, as well as center of mass coordinates of the structures are input into a neural network. The center of mass coordinates were scaled using two normalization schemes, a simple linear normalization scheme agnostic of the patient anatomy, and an anatomical normalization scheme dependent on patient anatomy. The results of all of the individual slice classifications are then aggregated into a single classification by means of a voting algorithm. The total classification accuracy of the final algorithms was 97.6% mean accuracy per class for nonanatomically normalization scheme, and 97.9% mean accuracy per class for anatomically normalization scheme. The total accuracy was 99.0% (13 errors in 1302 structures) for the nonanatomically normalization scheme, and 98.3% (22 errors in 1302 structures) for the anatomically normalization scheme. John Wiley and Sons Inc. 2022-06-10 /pmc/articles/PMC9512347/ /pubmed/35686988 http://dx.doi.org/10.1002/acm2.13662 Text en © 2022 The Authors. Journal of Applied Clinical Medical Physics published by Wiley Periodicals, LLC on behalf of The American Association of Physicists in Medicine. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Radiation Oncology Physics Livermore, David Trappenberg, Thomas Syme, Alasdair Machine learning for contour classification in TG‐263 noncompliant databases |
title | Machine learning for contour classification in TG‐263 noncompliant databases |
title_full | Machine learning for contour classification in TG‐263 noncompliant databases |
title_fullStr | Machine learning for contour classification in TG‐263 noncompliant databases |
title_full_unstemmed | Machine learning for contour classification in TG‐263 noncompliant databases |
title_short | Machine learning for contour classification in TG‐263 noncompliant databases |
title_sort | machine learning for contour classification in tg‐263 noncompliant databases |
topic | Radiation Oncology Physics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9512347/ https://www.ncbi.nlm.nih.gov/pubmed/35686988 http://dx.doi.org/10.1002/acm2.13662 |
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