Cargando…

The pyroptosis-related gene signature predicts prognosis and indicates the immune microenvironment status of chronic lymphocytic leukemia

Chronic lymphocytic leukemia (CLL) is the most common leukemia in the Western world with great heterogeneity. Pyroptosis has recently been recognized as an inflammatory form of programmed cell death (PCD) and shares a close relationship with apoptosis. Although the role of apoptosis in CLL was compr...

Descripción completa

Detalles Bibliográficos
Autores principales: Sha, Yeqin, Jiang, Rui, Miao, Yi, Qin, Shuchao, Wu, Wei, Xia, Yi, Wang, Li, Fan, Lei, Jin, Hui, Xu, Wei, Li, Jianyong, Zhu, Huayuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9513039/
https://www.ncbi.nlm.nih.gov/pubmed/36177050
http://dx.doi.org/10.3389/fimmu.2022.939978
_version_ 1784797966117109760
author Sha, Yeqin
Jiang, Rui
Miao, Yi
Qin, Shuchao
Wu, Wei
Xia, Yi
Wang, Li
Fan, Lei
Jin, Hui
Xu, Wei
Li, Jianyong
Zhu, Huayuan
author_facet Sha, Yeqin
Jiang, Rui
Miao, Yi
Qin, Shuchao
Wu, Wei
Xia, Yi
Wang, Li
Fan, Lei
Jin, Hui
Xu, Wei
Li, Jianyong
Zhu, Huayuan
author_sort Sha, Yeqin
collection PubMed
description Chronic lymphocytic leukemia (CLL) is the most common leukemia in the Western world with great heterogeneity. Pyroptosis has recently been recognized as an inflammatory form of programmed cell death (PCD) and shares a close relationship with apoptosis. Although the role of apoptosis in CLL was comprehensively studied and successfully applied in clinical treatment, the relationship between pyroptosis genes and CLL remained largely unknown. In this study, eight differentially expressed pyroptosis-related genes (PRGs) were identified between CLL and normal B cells. In order to screen out the prognostic value of differentially expressed PRGs, univariate and multivariate Cox regression analyses were conducted and a risk model with three PRG signatures (GSDME, NLRP3, and PLCG1) was constructed. All CLL samples were stratified into high- and low-risk subgroups according to risk scores. The risk model showed high efficacy in predicting both overall survival (OS) and time to first treatment (TTFT). Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and Gene Set Enrichment Analysis (GSEA) showed the dysregulation of immune and inflammatory response in the high-risk group. Single-sample GSEA (ssGSEA) of immune cell infiltration and the activity of immune-related pathways also displayed decreased antitumor immunity in the high-risk group. In conclusion, PRGs are of prognostic value in CLL and may play important roles in tumor immunity, and the underlying relationship between PRGs and CLL needs to be explored further.
format Online
Article
Text
id pubmed-9513039
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-95130392022-09-28 The pyroptosis-related gene signature predicts prognosis and indicates the immune microenvironment status of chronic lymphocytic leukemia Sha, Yeqin Jiang, Rui Miao, Yi Qin, Shuchao Wu, Wei Xia, Yi Wang, Li Fan, Lei Jin, Hui Xu, Wei Li, Jianyong Zhu, Huayuan Front Immunol Immunology Chronic lymphocytic leukemia (CLL) is the most common leukemia in the Western world with great heterogeneity. Pyroptosis has recently been recognized as an inflammatory form of programmed cell death (PCD) and shares a close relationship with apoptosis. Although the role of apoptosis in CLL was comprehensively studied and successfully applied in clinical treatment, the relationship between pyroptosis genes and CLL remained largely unknown. In this study, eight differentially expressed pyroptosis-related genes (PRGs) were identified between CLL and normal B cells. In order to screen out the prognostic value of differentially expressed PRGs, univariate and multivariate Cox regression analyses were conducted and a risk model with three PRG signatures (GSDME, NLRP3, and PLCG1) was constructed. All CLL samples were stratified into high- and low-risk subgroups according to risk scores. The risk model showed high efficacy in predicting both overall survival (OS) and time to first treatment (TTFT). Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and Gene Set Enrichment Analysis (GSEA) showed the dysregulation of immune and inflammatory response in the high-risk group. Single-sample GSEA (ssGSEA) of immune cell infiltration and the activity of immune-related pathways also displayed decreased antitumor immunity in the high-risk group. In conclusion, PRGs are of prognostic value in CLL and may play important roles in tumor immunity, and the underlying relationship between PRGs and CLL needs to be explored further. Frontiers Media S.A. 2022-09-13 /pmc/articles/PMC9513039/ /pubmed/36177050 http://dx.doi.org/10.3389/fimmu.2022.939978 Text en Copyright © 2022 Sha, Jiang, Miao, Qin, Wu, Xia, Wang, Fan, Jin, Xu, Li and Zhu https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Sha, Yeqin
Jiang, Rui
Miao, Yi
Qin, Shuchao
Wu, Wei
Xia, Yi
Wang, Li
Fan, Lei
Jin, Hui
Xu, Wei
Li, Jianyong
Zhu, Huayuan
The pyroptosis-related gene signature predicts prognosis and indicates the immune microenvironment status of chronic lymphocytic leukemia
title The pyroptosis-related gene signature predicts prognosis and indicates the immune microenvironment status of chronic lymphocytic leukemia
title_full The pyroptosis-related gene signature predicts prognosis and indicates the immune microenvironment status of chronic lymphocytic leukemia
title_fullStr The pyroptosis-related gene signature predicts prognosis and indicates the immune microenvironment status of chronic lymphocytic leukemia
title_full_unstemmed The pyroptosis-related gene signature predicts prognosis and indicates the immune microenvironment status of chronic lymphocytic leukemia
title_short The pyroptosis-related gene signature predicts prognosis and indicates the immune microenvironment status of chronic lymphocytic leukemia
title_sort pyroptosis-related gene signature predicts prognosis and indicates the immune microenvironment status of chronic lymphocytic leukemia
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9513039/
https://www.ncbi.nlm.nih.gov/pubmed/36177050
http://dx.doi.org/10.3389/fimmu.2022.939978
work_keys_str_mv AT shayeqin thepyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT jiangrui thepyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT miaoyi thepyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT qinshuchao thepyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT wuwei thepyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT xiayi thepyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT wangli thepyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT fanlei thepyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT jinhui thepyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT xuwei thepyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT lijianyong thepyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT zhuhuayuan thepyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT shayeqin pyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT jiangrui pyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT miaoyi pyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT qinshuchao pyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT wuwei pyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT xiayi pyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT wangli pyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT fanlei pyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT jinhui pyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT xuwei pyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT lijianyong pyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia
AT zhuhuayuan pyroptosisrelatedgenesignaturepredictsprognosisandindicatestheimmunemicroenvironmentstatusofchroniclymphocyticleukemia