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Synthesis of patient-specific multipoint 4D flow MRI data of turbulent aortic flow downstream of stenotic valves

We propose to synthesize patient-specific 4D flow MRI datasets of turbulent flow paired with ground truth flow data to support training of inference methods. Turbulent blood flow is computed based on the Navier–Stokes equations with moving domains using realistic boundary conditions for aortic shape...

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Autores principales: Dirix, Pietro, Buoso, Stefano, Peper, Eva S., Kozerke, Sebastian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9513106/
https://www.ncbi.nlm.nih.gov/pubmed/36163357
http://dx.doi.org/10.1038/s41598-022-20121-x
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author Dirix, Pietro
Buoso, Stefano
Peper, Eva S.
Kozerke, Sebastian
author_facet Dirix, Pietro
Buoso, Stefano
Peper, Eva S.
Kozerke, Sebastian
author_sort Dirix, Pietro
collection PubMed
description We propose to synthesize patient-specific 4D flow MRI datasets of turbulent flow paired with ground truth flow data to support training of inference methods. Turbulent blood flow is computed based on the Navier–Stokes equations with moving domains using realistic boundary conditions for aortic shapes, wall displacements and inlet velocities obtained from patient data. From the simulated flow, synthetic multipoint 4D flow MRI data is generated with user-defined spatiotemporal resolutions and reconstructed with a Bayesian approach to compute time-varying velocity and turbulence maps. For MRI data synthesis, a fixed hypothetical scan time budget is assumed and accordingly, changes to spatial resolution and time averaging result in corresponding scaling of signal-to-noise ratios (SNR). In this work, we focused on aortic stenotic flow and quantification of turbulent kinetic energy (TKE). Our results show that for spatial resolutions of 1.5 and 2.5 mm and time averaging of 5 ms as encountered in 4D flow MRI in practice, peak total turbulent kinetic energy downstream of a 50, 75 and 90% stenosis is overestimated by as much as 23, 15 and 14% (1.5 mm) and 38, 24 and 23% (2.5 mm), demonstrating the importance of paired ground truth and 4D flow MRI data for assessing accuracy and precision of turbulent flow inference using 4D flow MRI exams.
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spelling pubmed-95131062022-09-28 Synthesis of patient-specific multipoint 4D flow MRI data of turbulent aortic flow downstream of stenotic valves Dirix, Pietro Buoso, Stefano Peper, Eva S. Kozerke, Sebastian Sci Rep Article We propose to synthesize patient-specific 4D flow MRI datasets of turbulent flow paired with ground truth flow data to support training of inference methods. Turbulent blood flow is computed based on the Navier–Stokes equations with moving domains using realistic boundary conditions for aortic shapes, wall displacements and inlet velocities obtained from patient data. From the simulated flow, synthetic multipoint 4D flow MRI data is generated with user-defined spatiotemporal resolutions and reconstructed with a Bayesian approach to compute time-varying velocity and turbulence maps. For MRI data synthesis, a fixed hypothetical scan time budget is assumed and accordingly, changes to spatial resolution and time averaging result in corresponding scaling of signal-to-noise ratios (SNR). In this work, we focused on aortic stenotic flow and quantification of turbulent kinetic energy (TKE). Our results show that for spatial resolutions of 1.5 and 2.5 mm and time averaging of 5 ms as encountered in 4D flow MRI in practice, peak total turbulent kinetic energy downstream of a 50, 75 and 90% stenosis is overestimated by as much as 23, 15 and 14% (1.5 mm) and 38, 24 and 23% (2.5 mm), demonstrating the importance of paired ground truth and 4D flow MRI data for assessing accuracy and precision of turbulent flow inference using 4D flow MRI exams. Nature Publishing Group UK 2022-09-26 /pmc/articles/PMC9513106/ /pubmed/36163357 http://dx.doi.org/10.1038/s41598-022-20121-x Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Dirix, Pietro
Buoso, Stefano
Peper, Eva S.
Kozerke, Sebastian
Synthesis of patient-specific multipoint 4D flow MRI data of turbulent aortic flow downstream of stenotic valves
title Synthesis of patient-specific multipoint 4D flow MRI data of turbulent aortic flow downstream of stenotic valves
title_full Synthesis of patient-specific multipoint 4D flow MRI data of turbulent aortic flow downstream of stenotic valves
title_fullStr Synthesis of patient-specific multipoint 4D flow MRI data of turbulent aortic flow downstream of stenotic valves
title_full_unstemmed Synthesis of patient-specific multipoint 4D flow MRI data of turbulent aortic flow downstream of stenotic valves
title_short Synthesis of patient-specific multipoint 4D flow MRI data of turbulent aortic flow downstream of stenotic valves
title_sort synthesis of patient-specific multipoint 4d flow mri data of turbulent aortic flow downstream of stenotic valves
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9513106/
https://www.ncbi.nlm.nih.gov/pubmed/36163357
http://dx.doi.org/10.1038/s41598-022-20121-x
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